BtaINT0159751 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107152941-107153334:+
Coord C1 exon
chr2:107152941-107153049
Coord A exon
chr2:107153050-107153223
Coord C2 exon
chr2:107153224-107153334
Length
174 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CCTGCCCCATGGCTCCCCAGGTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GATCCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCAAGTCGAGACAAACTCCTATGACATCCAGCGGCTGCTCCACGTAAAGGGCAAGAGGAATGTGGTGGCCGGAGAG
Seq A exon
GTGGGCATCAACCAGGGCTCAGGGGGCACAGCCTCCTCTCCTCCTATCCACTGCCCTGTCTGGGCGGAGGGCAGAGGCTGAGGAGGGGTGAGGGGCAGGGAAGGGGTGGGGGAGAGATTGATGGATGATGGACAGGGTCTGAGTGGGGTCTGTGCCTGCCCCATGGCTCCCCAG
Seq C2 exon
GTGGAGATGTCCTGGAAGAGTTTCAACCGTGGGGATGTTTTCCTCCTGGACCTTGGGAAGCTCATCATACAGTGGAATGGGCCGGAGAGTAACCACATGGAGAGACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGGAAAGGGGGCGT
R:
CCTGAGTCTCTCCATGTGGTT
Band lengths:
220-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]