DreINT0036831 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6785217-6788129:-
Coord C1 exon
chr23:6788000-6788129
Coord A exon
chr23:6786024-6787999
Coord C2 exon
chr23:6785217-6786023
Length
1976 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGATGCCCCTCATGACACAGACC
3' ss Score
5.8
Exon sequences
Seq C1 exon
ATGGAAGCAAATAACCATTTTAACTATGGGCCTCACTCTTCTGTGTCCGCTAACTCAGGACTGAAGCATTCCTCAGGAGATTCTCTCTATACTAACGGGTCCTCCATGAGCTTCCCCCAGCAAGGGAAAA
Seq A exon
GTGAGTTTCTGCTATCTGTGGATTATAAATGGAATGCATACATTAGGGCTGGGCTATATATGTAAAAAATGTCATATTATAATACAAGTCATCTCGTATCCCGAAAATGATTTATCATGATATAGTCAGTAATCGATAATAATGACCAAAAATAAAGGGCTATTTTATTTTATTATTTTCATTTTTAAATATGTACTTTTATTTATCACCTTATTTAGAACTTCAGGCGCAAATGTTTAACTAAAAATGTGTAAATAATAAATTAATATTAGGGTTCAACGATAAGGACATTTTCTACTGGCCCAACTTGACCAGCGTTTCAGATTTTTACTTGCCCTGCAAAAATTTTGACTAGCCCCAACAAAATAAATAAATAAATTTTGTTATTTCTTAACCAGATATTTTAAATATTGTGTCAAAAACAATGTCTGTGAATTTAGAATTTAAATATTTTAAAATTGTTAAAATATTTAGCAGTAAAATACAGCAGTATGGAAAATGTGCTGGTATTTTATTGCAAAGCAAAAAGTGGCTGAATTAAAAGTGACAGAAAACTATGTAAAACATTAATTACTTCATTTTTATCGTTGTGTTCTGCCCATGTAAATATCTTTTTCCACAACGTTAGAAACAGACTTTTTTTTTTAACCTCATAATTTTAAGTTGCTGTCTCTTCTGTTCTGGTTTTTACCAGGTTGTGGAAAAAAGTAACATGCTCACAACCAATCAGATAAAAGGAACCAAAAAGCAATATGGTGTTTACGACTTCACAGAAAAGGTAGCATTCAAAGACTTAAAAGCACAAATTGTTTCTCCATTCTAAGACTCTGTTTACGCACAACTGACAAATAGTCACAGGCAAATTAAAATTTGATGACAAGGCAGCACTTGCCTGATCGGACCAGTTACGATTCTCTCTACTGTCCTGAACATCTCTCACGCTGGCCATCGGGCAGTCCTTATTGTTGATCCCTGAATATTAATAAAATATAAAACTTTTTTCATAAGCTAATTATAGGGCCAACATAAAAAAAATCGCAAATAAAATGCAAACATTGTACTTTCAAGATTGCATCTGACTCACAACACTGTTAAGATTTCCCTCTGCATATTACAATGGTGTGTAATATTGCAGTCATTTAAATGATGAACTGATTACCATAAATTATATTTTTTGCAACACTATGAAATGAACAGTAGTGCATAATGTGAAATGATAGACGTTTTATTTTTTTCTGTACAATATATATTGCACAGCCTTATGCTGTGTTTACACCAGACGTGGCAAGCGCGGATAAATCATGCTATTCGCATTTCATTCCTTCATTTGCGCATCAAATTCACTTAAAAGCAGACGCAGATTTGCATAATGGGCAGTACTTCTGTCTGCCCGGTGATTGTAGCTTCGTTGCTAAACGGCTAATATGGTTGTGTTTATATGCTTTATGAAGGTTGAAAAACAGCATTGATTCGTTTGGAGCCGTGTCTGAGTGCACTGTATCTTTTCAGAGGTGCACCCAGCTGTGTGATTTCATCAACTCTTCTAGAAACTATACCTGGATGACAAAAGCTTCCAGTGGTGCTTCTGACTGAGGCGAGCCCAGTTTGATGAACTGTTGTCCGGTATTGGCTGGAGGATTTTCTCCCGGGACACCGACAACAGGTGCTACGTTATAATGACTCCCCCACAAGAGCAAGCTGCTGAAGTTCAGATTTTCGAACTCGACAATTTGCGTGAAACACACAATATGCACGTTAATCGCACAAAACGTTCAACTCGCGCCGCCTCATTCGTGTGTATCGCGCCGCATGATGTCTATTTGCGTCTTTGAATTGACTTAACATGTAAATCACTTGCGCTTGACACTTCCACGTCTGGTATGAACACAGCATTAGCAAACATAAGTCAACACCTGTCATAGTAGATTAATAATGTTGTCTGTTTTTTTTTTCCTCTGATGCCCCTCATGACACAG
Seq C2 exon
ACCTGAATGGCGAAATGAATGTGAATGGCATCACTACTGCAGGTGGGAGCAGCCAGCCTGGCACCCTCCCTCCCTCTTCTTCTTATCCTCATATGAGCAACCATCACCTCCCAGGCAGCATTGGATTTGACTATCTGTGGGGCCAGTCACAGTTCAGCCCAGCGATGGGGCCTGTACCTCCCCACGGGTTGCACCAGAAACCAGGCTCACAACCACAGCAGCCTCAGCAGCAGCAGCACCACTTCCAGGGGCATGGACCCTACCAAGTCAACGGCAGCATGGGACCCTCTCGGCAGCCCCTGGGCTCTGGGTTGCAGTATTGGGGAAGGGGTAATCCTGGGCCGCAGCAGCAGGGGGGCTCCTCGATGTCCATGGGATTTAACTCTCATAGCATATATGGGTCATATCCCAACCAGGCTCATCAGAGCATCCCAGTGTCCCAGCATCACCAGCAGACTCCAGCCTTGCAGAACCAGTCTGCAGCATCACATCATCTCCAACACCCCTCGCATCTCCACCCACCTCAACACCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCATTATACTATAATGCCTAATGGAATGCCCTTTTACCAGCATGCACCACACCAGTCCCAACCGCAGACCCAGACCCAGTCTCAAGCCCAGGCTCAAGTGGTACAGTCTGTCGGGCAGAGCTTTACGCCTCCACAAGGAAGCCCTCAGCACCATCATGTGGGCAGTGGAGGAGGCAGAAGCAGTCCACACCATGTGTCCATCCCAATGAGTTCCCCTTCTCCTAAGAGCAGAGAGATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.949
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTAACTCAGGACTGAAGC
R:
CCGTTGACTTGGTAGGGTCCA
Band lengths:
358-2334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]