RnoINT0024793 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2529077-2531691:+
Coord C1 exon
chr7:2529077-2529212
Coord A exon
chr7:2529213-2531097
Coord C2 exon
chr7:2531098-2531691
Length
1885 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTCTGTTTTTTCTGCCAGGTT
3' ss Score
11.51
Exon sequences
Seq C1 exon
ATGGAGGCAAACGACCATTTTAATTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCAGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTAAGTATGGAGGCCACAGACCTGTGAGGGGAATGGGCATCATCAGATCAGGTTGGCAAGAGGAGACTGAAGTCACAACAACTCTTTGTTGGCAGGTAGTGACAGGAATAAATCCATAGTGCTTACTACTATCCAGAGGGAAACCAAGCTTCAGAAAAGGTTTAGGGGCTTAAGGGGATGTATTTATTCCCGTCTTAGATCTAGATTGGAAGAGACATATGAGCTTTTCATCTTAGCTTGCTTTTCTGTTGGTCCTGTTCCTGACTACTGGCAGAAAAGGAGGTACCTGCTGCTTCTGAAGATGAAGGTGGTGGGTCTGTGGCTTGTCTTTAGGAATGAGAAGGATGTTTGGACTGGGATTGAAGAAGGTGGTGAAGGTCCCCATAAACTGTCTTTAGCTTGTGCAGGAGCTGCCTCTCGTCCTTGCACACAGGGGTAGGATGGGCAGGGCCTCCCCAGAAATTCATCATTCCTCATGAAAGTGTTGCTGTTGAGCTTATTTTCTTTTTCTTTTTTTCTTTGGGGGTAGTGACTTTTTCTAGCCCAGGATGTCTTTGAACTGATGACAGTTCTCCTGCTCAGTTCTTTTATCAGTTAACATTCTAAATTTGCCTGATTTCAAATCATTGTGCTTAGAAGTGGAATTCCACATGCTTTCTCCTTCCTTGCAGTCAAGCCGTCTGACTTGTACTTGCTTTCCTCCTGTCATTTATAAGATACTTGCAGATAAGCACAAGCCAGCCCCTCTTTCTCATTGGAATTTCCACACGTTCATACCCACCTACTGCTGTAGGATTCTTCCATATACAGACTCCTGCTTGCAACTTCTTTAGTATCTTAGTCCCTTTTTTTTTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCATCTTAGTCCCTTTTATTCATTGTTGTCTTTTGCAAACTCAAAGATAGCTGTTTTTAGAGCTGAATTCTCTCTGCAGCACTGGTCATGCAAAGATTTTTACCTACTGCATATTACCCTCTCGGGCCTATGGTGAGGGGCTAATAACCCCAGCCTTCTGAAATGGAATCTTGTCACTGTGGTGACTGCAAATTCTATTCTTAGCCCAGCACAAAGTGCTGGGTCTGCATGTAGCAGTGAGGTGGAGGCTGTCCCTTCTGGTGGCACTGTAGGGCCAAGTAGGCGCTAATGAAAGAGGTGGGTGGGAACTGGAAAATTCAGTCAGGCCCTCCAAGGAAAGACTTCTCATAAGGAATGAGAGTGGGGAAGAATGCAAGCCATTTGTAGGAAACCTATGCGCAGCTTCATGTAGTAAAAGCAGTAACAGCTGCTGCCACCAGCTCCTGTGGCACACCGACCACAGTCTCAGCAGCACATCGTCCCCTTGAGAGGTAGAAGATAAAGGTGACAGAGGAATCCCCTTGCCTGTACCCTCCACATTGTCAATTTGAAGTTTATTTGATAGTTATATGTATATTCATAGCCAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGAGTATTTCTTATATACATTTCGAGTGTTATCCCTTTCCGGTTTCCGGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTGCCGCCCTCCCCCCATAGACTAGTTCACTGGGGGTTCAGTCTTAGCAGTACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAACCTTTTCTGTTTTTTCTGCCAG
Seq C2 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAATACCCTGGGGGGCAATACCCGCTCAACGGTATCCTTGGGGGCAGCCAACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCGTGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCACAGACTTCTCCAATGCTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGGTGTAAGCAGTGACCTCCATCCTGATGAGGCAGCGGAAAAGGAGCTGACCTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAACTGGAGGAAGAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTACACTAACGGGTCT
R:
TGGCTCCCAGCTCGAAGATTA
Band lengths:
347-2232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]