MmuINT0024130 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127545950-127548404:+
Coord C1 exon
chr10:127545950-127546087
Coord A exon
chr10:127546088-127547810
Coord C2 exon
chr10:127547811-127548404
Length
1723 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCTGTTTTTTTTCTGCCAGGTT
3' ss Score
10.26
Exon sequences
Seq C1 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTAAGTATGGGGGCCATAGATCTGGGGAGAGGATGGGCACCATCAGATCAGGCTGGCAAGGGGAGACTGAGGTCTCTCTCGGGCTGGCCACCGCACAACTCTTTGGCAGGTAGTGACCAGAAGCAATCCAGAGACTACTACAGCTAGAGAGAACGCAAGCTGCTGAGAAGGGGGCTTAAGGAAGCTTTTTTTTTTTTCCCTTTTTCTGTCTTGGATCTAGATTAGAAAAGATTTAAAAAGACATACAAGCTTTTCCATCTTAGCTTGCTCTTTTGTTGGCCCTTTTGCTGGCTACTGGCAGAAAAGGAGGAAGCTACTACTGCTAAAGATGAGGGTGGTGGGTCTATGACAAGGTAAGGCCCTCTGGAAAGGTTTTTTTGTTTCGTTTTGTTTTTTGATTTTTTGAGACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTAATTCACGTTGTAGACCGGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCAGCTTGGAAAGTTGTTTTTAGGAATGAAAAAACTTTTGGACTAGGTGAAGAGGGTGGGTGAAGGTCATGGTAACCATGTTTTTAGCTTGTGCAGGAGGAGTGCTGGGGCTGCCTCATGTCCTTGTTCCCAAGGGTAGGATGGACAGGGCCTCCCCTAGAAATTTATCATTCTACATGAAAGTGCTGCTGTTGAGGTTATTTTCTTTTTCTTTTTTGTTTTCTTTAGGGGTAATTGCTTTTTCTGACCCAGGATGGCTTTGAACTGGTGACAGTCTTCCTGCCTCAGTTCTATCAATTAACATTCTAAATTTGTCTGGATTTCAAATCATTTTGCTTAAAAGTCCAATTTCAAATGCTTTCTCCTTCCTTGCAGTAGAACAGTTCTGACTTGTACTTGCTTTCCTCCTGTCAGTTATAGGACACTTGGAGATAAACACAAACCCCTCTATTTCATTGGGATTTCCACAAATACATACCTACCTCCCTGCTGTAGGATTTCCCCAACCATACACCTGCTTGCAGCTTCTTAGTATCTTAGTCCCTTTTATTTATTGTTGTTTTTTGCAAACTCAAAGATAACTGTTTTTAGAGCTAGATTCTTTCTGCAGCACTGGTCATGCAAAGATTTTTACCTACTGCATATTACCCTCCTGGGCCTATGGGGAGGGGCTAACCCCAGCCTTCTGAGCTGGAATCTTGTCACTGTGGTGACTGCAAATTCTATTCTTAGCTCAGTGCAAAGTGCTGGATCTGCATGTGGCAGTGAGGTGGAGGCTGTCCCTTCTGGTGCCACTGTAGGGCCAAGTAGGCACTAAGCAAAGAGGTGGGTGGGGACTGGAGAATTCAGTCAGACCCTCCAAGGAAAGAATTCCCATAAGGAATGAGAGTGGGGAAGAATGCAAGTCATTGTAGGAAACGTATGTACAGCTTCATGTAGTGAAAAGCTTGCAGGAGCAATAACAGCTGCTGCCACCAGCTCCTGTGCCACACCTAGACCGCAGCCTCAGCAACAGCTGCTAAGCGTACACAAGAGCATCCAAGTTTAGTGTCCCCTTGAGAGGTAGAAGATAAAGGGAGCAGAGGAGTCCCCCTTGCTTGTACCTTCAACATTGTCAATTTGAAGTTTATTTGGTGGCGTTATATGTATGTTCATAGCCAAACCTTTTCTGTTTTTTTTCTGCCAG
Seq C2 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACAATACCCGCTCAACGGTATCCTTGGGGGCAACCGACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGATCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACTTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGGAAGAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=NA C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTACACTAACGGGTCT
R:
TGGCTCCCAGCTCGAAGATTA
Band lengths:
347-2070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: