HsaINT0016801 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56615014-56617532:-
Coord C1 exon
chr12:56617395-56617532
Coord A exon
chr12:56615608-56617394
Coord C2 exon
chr12:56615014-56615607
Length
1787 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTCTTTCTTTCTCTGCCAGGTT
3' ss Score
11.79
Exon sequences
Seq C1 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCCCCTGCACCTGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCAGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTGAGTGTGAGGGCTGCTTGGCCTGGGGAGGGAATGGGCATCATCCCTTTAGGGCAGATTCATGGGGGGATATTTTGCTCTACTTTGCTGCTGGAGAGAAATCAACTTCTAAGAACAAGTTCTAGGGTTTTTTGGAAACATTTTTTGTATTGATTTAAGGTTGGAAGAGATTAGAAAAACCCACTGGCTTTTTCATCTTAGCCTGTTCTTCTGTCAGCCCTGTTCCCCTGGCTGCTGACAGAGCAGTGAAGTGGCTACTGCTGCTGATAACCCATGAGAGAGATAAAGTGCTAGCCTTCTAAGAAGCTGTTTTTAGAGGTTAGGGAAGCTACACTGGGCCAGGACTGAGAGTTGAATGAAGGTTGCAGTGTATTTATTGCCTTTTAGTTTGTACATCAGAGAAAGGCAGATGCTAGAAGTACTTATTCCACCTTCTGTCCTTGGATGGAAGGTAGGGACAAGGGAAAGTTTAATGCTTACCTAGTTCCCCCAGAGAGAAGTTCATAATTCCATATGGAGGTGTTGCTGCCAGGATTGGGTCTTTTCCTGGATTTGGCTTACCAGTTGCTCTGTACCATGACTCGCCAGGTACCTCTGTAATCTTGCTTGGGTTTCAAGTCCTTTATACTTGGAAGCAGAGAGAAGCCCACATGCTTCCCTCCTTTCTTGTAGCAGAAAAATCCTGCTACTTCTCCCTCCGATCCTCTCGAAGAGGGTTGCAGATGGTAGAAGCTCCTTTATTTCATTGGATTCCACCCTACCCTCAAGCTTCCTTAATATCTTGGTTCTTTTTGATTGATTGTCCTCCATCCCAGAGGTTGCCATTGATGATGAGAGCTGAATTCTACAGCACACAAAGTGCCCCCCCTACCCCGCCAGCTGGCATATTACCTTCCAATGCCTATAGGGAAGGGCCAAGCCCAGCCTTCTGAGCTGGGTTCTTGTCGCTGTGGTGACTGCAAATTCTATTCTTAGCCCAGCACAAAGTGCTGGATCTGCATGTGCCAGTGAGGTGGAGGTTGTTCCTTTTGGTACCACTGTGGGGCCAAATAGGCACTGGGGAAAGGGGGCCCCTAGCGAATTCAGTCATGCCCCTCCAAGGGAAGAAATCCCCTAGGGAATGAGAGTAGGGCAGAATGCAAGTCACTGTAGGGAGTCTGCAAACAGTTTCATTTAATTAAAAACAAAAAAAAAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAAGAGATGAGACCATCCTGGCCAACACGGTAAAACCCCGTCTCTACTGAAAATACAAAAATTAGCCGGGCGTGGTGATGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCAGGGAGGCAGAGGTTGCCGTGGGTCGAGATTGCACCACTGCACTCCAGCCTGGTGACATAGCGAGATTCCGTCTCAAAACAAACAAACAAAAAATAAACCAAAAAAAAGCCAGCAGTAAGCAGCAGCAACCAGCTCTGCTGGTGGCTCTCATGGTAGGCCTGGAGAGCTCTCTAGCCCCCTACTCAGCCTCAGCAGCAGTTGCTAAACCTACATCCAGGAGCCTCTGGGCTTGGTGTTCTCCAGAGACCCAAAAACTAAATATAGCAGGGGAGGAATCCCCCTTCCCTTTACCATGTCTTTTTCTAGTCAGTGCTATTACTTTGAGTTTGTTTTGGTAAAGTTGCTTGCCTACATATCTGTAACTGACCTTTTCTTTCTTTCTCTGCCAG
Seq C2 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAGCGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAATACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCATAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTTGATTCACAAGAACTGTATGATTCCTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCTAGCATTCAAACCTTTGCACCCTCCCAGGAGGTAGGCAGTGGTATCCATCCTGATGAGGCAGCAGAAAAGGAGATGACTTCAGTTGTGGCAGAGAATGGCACTGGCTTGGTAGGCAGCTTGGAGCTGGAAGAAGAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTACTGGCCTTCCCCCT
R:
AGGATGCCGTTGAGTGGGTAT
Band lengths:
353-2140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development