DreINT0036866 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11729248-11732549:+
Coord C1 exon
chr6:11729248-11729313
Coord A exon
chr6:11729314-11732504
Coord C2 exon
chr6:11732505-11732549
Length
3191 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTATGTTTTGTGTTTGTAGGAG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GCAAAGCGGAAAAAGAGAGAGGAGGCTGCCAATGCCAAAATGTTGGAGGCGGAAAAGCGAATAAAG
Seq A exon
GTCAGTTTGTGAGATGCTCCACACCTACTCTGCGCACTATGAATCATCAGCGTGGAAAACCCCCCACCCCAGAATAAAAAAAAAAAGAAAAATGTCTCGCTTTCACCTTCCCCGGCAAAACATTAACATTCCTCGGCCACAACAAAAGCAGCACAGCCTCTGTTTGACTGATGTCTGCCGGCCTGCAGGGGGGAAATTAGCTTGACATCTGGATTTTTGCTGCTGTTGTTTAAAAATGAAAAATGCACCGTGCATCTTTTTATGTCTCACACACATGGGGTCTCTCTGGAATACACAACCTGCTCTAAATAGCTCCCTTTATTTAAATGTCGAGCTTTATGACTTGCAGTTCACGTCTGTTAGCTTTGCACTGGTCTTTCTTAGGGTTGTATGATCAATGTGATGTACATTTTAAACTGTTGTTATCACTTACACGGCAATATACACAGTGTTGTTATGCAGAAAATGATTATATACATACACAACTGATCAAATATTTGGGGTGTGAGTCAATTCTATTCCCCGAGAACACTTTTTTGGTTTATTATTTAGCCTTTTTTTTACAGTGTACGTTCATTCATTTGTTTTCCTTTGGCTTAGTCCCTTATTTATCAGGGGGCATCACAGCAGAATGAAACGCCAACTATTCCAGCCTAAGTTTTTGACAACGGATGCCCTTCGAGCTGCAACCAAGTACTGGGAAATATCCATACACACCCATTTACACACACACAATATGAACAATTTAGCTTTTTCAATTCACCTATCCCACATGTTTTTGGACTCTGGGGAAAATTGGAGCACTTGGAGGAAACCCATGCCAACAAGGGGAGAACATGCAAACTCCAGACAGAAATGCCAACTGACCCAGCGGTGACTCGAACCAGTAACCTTCTTGCTGTAAGGTGACAGTGCTAACCACTGAGCCATCGTGTCACCCCGACTGAAGTTATACATCCAACTAATTGTCATCACAAAAATAATCTACATTATAAATGGAAAAGAGTTATTAGTATTGTTTTATGTAATATTTCATAAAATTACTGGCTTTATTTTAATTTCAGGCAAATAAAAAAACTTGACATAAATAATAAATATAATACAAAGCAAAAAAGCCAAAACTTCTCCAACCCTAAGAAAAAAAAATGTATGAAATTGATAAAATACAATTTACATGATGCCTTACCATTATAGTATTTAAATAAATGCCTTTTAAGTGAACATACAAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAATCATACTGACCCCAAACTTTTAAATGGTTGTGTATTAGAGCAGTCATTTTTACCTGGGGTTAGGGCTCAATGGTCAATAAATACACTTGTAACACAGTTGTAACATGACAATATACACATTTGACACTTTACATAACAAATAACATGTAAATAACATGCAAATAACATTTTTCTTGCACAGTTTAATTCATGATTCATAATATTATCGTCGATGCCTACAGAATTGTACAGTATATGCTATCATAACACCCGGCCCTAGTCATTCCCTTTAGAGAAAGAGAAACCGAAAATTTGATGATTCATCTTGTTTTTCTGTTTCAAATACATTTGTGTAGAAGGTGAAGGTTTTTAGTGAAACTCTTGCATCACTCGCATCTTACATTAATTAAAGAGATAGTTCACCCCAAAAATGAAAATTCACTCATCATTTACTCTTGGCTCGTTCTAAATCTTTTAATTCTGTTGAACACACACAAAAAAAGATATTTTGAAAAATGTTGAAAACCTGTAATCATTGATTTCTCTAGCTTTTGTTTTTTCTACTATAGATGTCAATAGTAACTAGTAGGGCTGCACGATATTGGAAAACACTGACATCTGACATTGCGATAAATATTATGATATGAATATAATTTCACCAGATCACTTAAATTATTTTGTTTGGAAAGAATTCAATCAGATCAGATTAGATTAGATTAGATTAGAATTAGATAGATTAGCATGATCAAGTCCTGTTCTATACATTGCATCTAAATAACATGGCCATCGTTGTACATTCACCAGGCACTTTATTATGTACACCTGTCTAACTGCTCGTTAACACAAATTTCTAATCAGCCAATCACATGGCAGCAACTCAGTGCATTTAGGCATATAAACATGGTCAAGACGATCTTCTGCAGTTTAAACCAAGCATCAGAATGGGAAAGAAATCATGTCAATTCCACAGCCTACCTGAGTATTGTTGCTGACCATGTCCATCCCTTTATGACCACAGTCTACCCATCTTCTGATCGCTAAATCCAACAGGATAACACGCCATGTCATAAAGCACGAATCAACTCAGACTGTTTTTTGAACATGACAATGAGTTCACTGTACTCAAATGGCCTCCACAGTCACCAGATCTCAATTCAATAGAGCACCTTTAGGATGTTGTGGAACGGGAGATTCACATCATGGATGTGCAGCTCACAATTCTGCAGCAACTGCCTGATGCTATCATACCAATATAGACCAAGATTTCCGAGGAATATTTCCAGTACCTTGTTGAATTTATGCAACAAAGGATTAAGGCAGTTCTGAAAGCAATAGGGGGTCCAACCAGGTACTAGTAAATTGTATCTAATCAAGTGGCCCGTGTGTGTATATCTTTATCTTTAGTAAATAATCTAATTCTGTGATGTGACTATTGCAAATACACACATTGCTATATTGATGCTTAAACGATAAATTATTCAGGTCTATTTACTATGTTTTTAACATTCTTCAAAATATATTTTGTGTGTGTGTGTTCAACAGACCAAAAAAAGCAGGCCAAGTCATGAGTGAGTAAATGATGACAGAGTTTTTATTTTTGCGTCCCCTAATGCCAAATGAGAGTTATCATGTAGTCTCTATTGGTTTACAAAATAAAAAACATGGATTCTTATCTTCTACGACCATCGGCATGTTACAATACCTGACACAGGAAAAAAAACTCATTTTTTTCCAGACCTTTTACAACAACAACAAAATATAACTTAAAGTCTTATGCTCAGAAACTGCTCTGATCGCTGGTTTCTTTTAAGACTGCATCGTAATGAATGTTTTGGTGCGGCATTGAATCGTTTTTATGTTTTGTGTTTGTAG
Seq C2 exon
GAGAAGGAGATGAGACGCCAACAGGCTGTTATTCTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]