MmuINT0024145 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59771728-59773337:-
Coord C1 exon
chr2:59773272-59773337
Coord A exon
chr2:59771773-59773271
Coord C2 exon
chr2:59771728-59771772
Length
1499 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
AAAAGTTTCTTATTTTTAAGGAG
3' ss Score
5.56
Exon sequences
Seq C1 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAG
Seq A exon
GTTAGTGTAGCTGAGAATCAAGAGTTTTTATTTTTAGAAATAAAAACTTCATTTGCATAACACCAATCATGAGAAAATCGTTTTCTCAAAACTACTATTGAAAAATGTATGTAAATGTGTGCTCTTATTTGTATGTATATTTTTGTATGGTTTTATTTCTTAATGTAGGTTTTATGTGAAGTTTTGATATTTGTAAGTGGAAGACATCAATCAGAAATGCAAAGTACTGCATGGCTCCTGGTTTAAGTTTTGCTTGATAAGAGTGATCTCCCAAACTAGTGGCTTGTCATTTGTGTTCATACCGTGCCCCAAATCCGACTGTCCCTCATAACTGTGTTCATGTGCGGTGTTCTATTTGTGAAAAATAAAGGCATAATTTAGGTATTGTGATGCTTGCCTGTAATGCTGACAGTCAGGAGGCTGGCTAAGGAGGCTCAGACTCCCAGTGCAGTACCCTAGCAAGACCCTGTCTATAAATATACAAGCAAATAAAGAAACAGGGAAACCCAGACAGAGACAAAGCTGTTAACTGTCACTGCCTAATAGCAGTCAGTCCGTTATATTACTGTACTATATTTGGGGGTGATTTGATTGATTCCCTGCCCCGTTCCCTCCCTGCTCAACTCCTAACACTCCTAAAACTGAGTGTTTATCGGGGCAGCTGAGCTGGCTAGTGCTGTAGGCTCCAGTGCAGTATTATCCGGGAGAGCCAAGGCAGGGTTCTGCTGTTAGCTCATTTGTTTTTGTTTGGAGACACCATAGGTTTGTGCTTGGGATGAAGCAGAACCTACCCAGCTAAGCAAAGCTGTCCTCCTACGCTCTACCCTAACTCTAGTTAGGATAACTCTATGATTATTTGAACATAAACTCCCTTACTTTGTTCTCTAGAATAAAGAATATTCTTGATTCTTTTGTACTCCTTTATATTTATTTACCCTTGATATTAAATTCACCTAGATTTTATTTTATTTTACAAAAGTCAATAGGTAACAATCTTATAGAATTGTTTTGCATTGTGGCCCCCCACACACACACTCCCTCATCCCCTTGGGGTTATACTGTGAACTGGTGGATACACACACGCACATGCATGTGTGCACACACATGCATCCATACTTAAGAGTAGGGGAGGGCTTTAGTAAGCTAATTTTAAGGCTTGAATCATATTTTATTAAGTAACTTAAACGTATGATTTTTATATGTTATGTTTGACAACCTGTTCACTCAGTCCAGCGATGTTGCTGTGGAAGTTTATTGTCCAGTAATTGACCTTTCAGTTGAGGTATCTCCTGCAAATGTCCTTGCTACAGATCACTCCATGCACTTAGTGGTAGGAAACAAATGGGGAGAGCCATCGCCAGTTAAGAGTGAATGGTCAGCTTTTTCTGTAGCTAAAGCTCTGAGGAGGCTAAAAATGTACCAGAAAGTGAAATTTTTATTATTAAGTGTGTTCCCAATCTCTCCTAAAAACCATATATCAAAAGTTTCTTATTTTTAAG
Seq C2 exon
GAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: