GgaINT0050412 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38220341-38221076:-
Coord C1 exon
chr7:38221011-38221076
Coord A exon
chr7:38220386-38221010
Coord C2 exon
chr7:38220341-38220385
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATACATTTCTTTTGTTTAAGGAA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
Seq A exon
GTTAGTTTAGATGTGCTGCAAATGTGAGTTATTTTCAATAACGTCTTAATAGGGAAAATCAGGAGCTGTCATTCACTGAGTATGGAACTGAATAGAAATGGCATATGAATACATTTGTTAGAATATGTATGTTATGTTTTTTAAATGTGTAACATACACCATCTTGTACATGTATGTGACATACAGAAGGACAGAAAAACACTTCCATGCAGATGCTATTTTCTTTATACCGTTACTTGAAGTTTTTCTTACTTGATATTTGGTTTGCATTACTTAAAATACTTGTACAGCAGCATCATTCATGATATTCTTTCAAGCACACTGTATCAAAATATTTTGCTGTTTCACAGCAAATGAAGTCTTGTATAGGCTGTGTGTATAGAAGCCTCTACAACTTTTCTGCAAACGCTGGAAGAAATAGTTCATATGTGCACTTCTCTTACTGCTTTAGTGTTTATTCTTGGTGTACTTTAACACTGAATTCCCAACTCAGAATACATGCAATTACTCTTCTGTAGCCAATATATGAAATAAAATTTTTATTGGGATGTGCCATTTCACTATACCAAAATGTGTTTATTGGGATGTACATTTGGATATCTTAAATACATTTCTTTTGTTTAAG
Seq C2 exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]