DreINT0036873 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11741080-11743140:+
Coord C1 exon
chr6:11741080-11741303
Coord A exon
chr6:11741304-11743065
Coord C2 exon
chr6:11743066-11743140
Length
1762 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TGTGTTTGTGTATCTTCCAGTGA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GCCAAGTCTATCTTGGGTGACCACCTGACCAATGTGGGTCTGAATCGGGACAATGTGTCAGAGGTTCTGCAGCTCTACATGGAGGCTCACTGCTCTCAGACTGATCTAGCGGATCTGACTCTGAGTTTGAGGACCAAAGCCTTCCAGGCCCACACGCCGGCTCAAAAAGCCTCTGTCCTGGCCTTCCTGGTCAATGAGCTCTCGTGCAGTAAAAGCGTGGTCAG
Seq A exon
GTACGAGTTTCCAGTTCATTGATCATTCAGAATTTTAAATCAGAATTACAATAGCTAAATACACACATGCCAAACATCTTAAAATGTATTTTTTTAATTATACATTTGAAATATTCTGTCATTTTACTCATCCTCCACTTGACTCAAACCTGTTTGATTTTCTTTCTTTTGTTGATCATAAAATAAGATATTATAAAGAAATGTAATGGTGTTTTTCACTGCAAGTTAAAAGATTTTAAAAAGTATTATTTATCATCAGTTTTGATTCATTGATTCATTACATTTAAGAACTGCATTTTTGAATAGCAAGTTTTCAAAAATGTTATTTTTAAATGTGTAAATAAAGCATTTTTTAAATTAAGCAGGCACTAATTTCTAGTACAAACCGAATTTTCTAGAACTTTTGACATATTTATTAAATTTATTCTTTATTTTACTAGTTTGTGCCATTAAAATAAAAGCACTATTCTCGAGATCTACCTGAGCTCAAACTCCCCTCTCGCCCTGGAACGGGAGGGAGCTCCGGGCTCGAGGATCTTATGAGCTCAGGGCTCTCGCCCGGGACAGCATGCCAAACAAGCTTATTACCAATCATAAGCTAAGTGTGAACTCTTGAATATAGACGCACGGCAAGCTCTCTGGAGAAAGTGAAACCGCTTGCACTTTTAGACGGCCTTGTAAAACAAAAACAGGACACGGCAGATTTTGTTCTTTTTGGCTTTGTAGCTGTTTATCAAGACAATGACAAGTTTTGTTTGAGTTCGGGTGGCCAGTGGGTCATTATTATATGTATAGAGTATTACAATGTAATGTCTCGACTGTATATTTAAAAAACCAATGGCTTTCAGCTGTGCGTCTAGCTCCACCTTTTGGTATCCTTTATTATGCCACAGTAGGTACACTTTGCAAAGGGTACCCTAAAAGTGGCCAATATTCTCATATATAAAATCAATCATAATAATAAGTATGTTCCACTTAATATATATAATATCAAATGTTTTATAATGACCCAGGACTGTCTCACTATAATAAGTGTCTGATGTCCTCATGTTCCTTCAGAAATCATTCTAATATGTTGATTTGGTGCACATCTATTATGAATTAATATTGGAGCAATACTCAATTGGAGCATCAATGTTGAAAACAGGTCATTGAAAAAAAATTGGCAACATTTTACAAGGTTTCATTTGTCAGGATTAATGCAGATGCTAACATGATCTAATACATAGCCATTTAGTTGCATATGTTTGGTTATAACATTGTAAATGTTAATTAATGAAAACCTCAATGTTAATCTTCTAATGATAATCTAATGTTAACTTACTTTGTCTGATAGCGTGCCATTTTTGGATTTTTATAATGCACAAAGGTTTTTATAGTGATCATTACTTTTTATCTCTCTTTAATATAATGTTGTAAACAGGCAGACAGAAAAATACTTTTCACATAATTTTACACAATTATTTTGTAGAATAAAATGTAATCAGGCAAAATATGTTTGACCAAATTCCTCTAAAAAGTTATGAATAAAACACAAAGATTTGTTTATGTTATTTGTGCTGAAGGTCTGATTTATGGGGAGATGTGAATATTTATGACTCATTGAAGTGCAAACATCATTTTAAAATATATATTGTAATTGAAATCTACCAGCACAAACTGCTGAATTGAAACATAATAATGTGAATTGATGTTTTTATGGTTATATACCACTGCTATCTACATTTGTCTGTAACAGATTTTGTGTTTGTGTATCTTCCAG
Seq C2 exon
TGAGATCGACAAAAGCCTGGAGCACATGAACGTGCTGAGGAAGGACGAGTGTATTGTGGAGGGCAAATTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACCTGACCAATGTGG
R:
TCAATTTGCCCTCCACAATACACT
Band lengths:
279-2041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]