RnoINT0024827 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45993720-45995471:-
Coord C1 exon
chr3:45995257-45995471
Coord A exon
chr3:45993795-45995256
Coord C2 exon
chr3:45993720-45993794
Length
1462 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATATGTTTTGTATCGGCAGTGA
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCAAAAACCGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAACCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAAGCCCACTGTGGACAGACTGAGCTGACCGAGAGCCTGAAGACTAAAGCGTTTCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTTGTTAATGAGCTGGCGTGTAGCAAGAGTGTGGTGAG
Seq A exon
GTGAGTCAGTTCTCCTGCTCTGAGCGTCACGGGAAACTGCTTAGAGAAAAACTAGAATTTGCAATCTAGCGCCATGAAGAAAATCAGAGTCATAAGTCATCATTTAGAGATGGCCACCAATACGATTTCAGTTTGTTTCTATGTGCTCTACTGAAAACAGCGATCATTCTGTATAATTTGGGATCTTTAAGTATTTTGCTAATTCTTTGTGTAGTGAAAATTTTGTTTATTGTTCGTTACCGTGCTGGAGTCCATAACCATTATAGCAGTCCAGAACTTCCCTACCTTGGCATTTCTGAGGACCCAGCCACCTGTTTTGTTGTGTACTACATTACACATTATATAATGTATAACTTTACATTACTAGCTTGTCGGTGAATTAGTTTACACCTTTTTTCCAAAGTACTTAATCTCATTTAAGATTCCGAGTCCATCTGGTACTTTAGTACTTGTGAAGGAAAGAGTTAGAATTTCAAGTTCTGGCATTTCAGGTTCACCGTTCATCCTGTGCTTATTCTTAATTTGTTTAAAATTTTTAATTATGTTACTTTTAGTCTTTCACCTTTTAATAAGGATTTGTGACTGTTCAGTGCCATTCATTTGTACTGTCAATGGGCATGTTAATCTTAGCTATGATATATTGGCATGGTTGTTATTTATTCTTTATATTCTTTGGGAATATTTCCAAGAGTGTAATAATACTTAGGCTTTGACTGAAAGCATTATTTCACTGTGCGTGAGCATGATAAGAGTATTAATGCTGAATGGCTCTTCAGAACATTTATACTCACGTAAACTCAACACACAGACAGCACTCACATCTTCTCTTTCAGAAGAATGAAGGCTCAATCAACTATGCTATCACCATTACCTAACACCACGTTTTTAGTTTCCATTTGAGCATTTGTAAAGCAATGTTCCCTGTGCATGACTAAGTATATGCACTCACATAAATATCCATGTATGTCCTCATTTCCAAGTTGAATTTGGAAATGATCACTCTTTAAATATATATCAACCACAACAGAATGGTGGTTGTTTTTTTTTTTTAAGATTTGTTTACTTATTACATATAAGTACACTGTAGCTGTCAGAAACCCCAGAAGAGGGCATTGGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCGGAATGCTGTTTTTAATTACAGATCTCTATTTTTGCAGTAGAAACCAAAGTAAATTTCCTAATAACAATATTGTAGCCAATAAAGAAATGGTTGCTTCTAAAAGTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTAAAATATGTGATGTGCATACTAAGTGGGGACCTTGCCTAACTAGATTGCATCTCCTCATATGTTTTGTATCGGCAG
Seq C2 exon
TGAGATTGACAAGAACATTGAGTACATGTCCAACTTGAGAAGAGACAAGTGGGTGGTGGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAACCGCTCTTGGAGAAC
R:
GCGGAGTTTACCTTCCACCAC
Band lengths:
288-1750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]