HsaINT0016833 @ hg38
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159383606-159385369:-
Coord C1 exon
chr2:159385155-159385369
Coord A exon
chr2:159383681-159385154
Coord C2 exon
chr2:159383606-159383680
Length
1474 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAAATTCTTGCATTGGCAGTGA
3' ss Score
3.93
Exon sequences
Seq C1 exon
GCTAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTACAGATATTTATGGAAGCCCACTGTGGACAAACTGAGCTTACTGAAAGTCTGAAGACCAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCTTCAGTCCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTCAG
Seq A exon
GTGAGCATATGCCCAGGCTTTTCCGTGATTTTTCCATTTTGAATTTTTCTAATCAAAAAGTAATACAAATTGATTATAGAAAATTGGAAAGTTACAGACTAGCACAAAGAAGAAAATTAAAATTGTACTTATCTCAGTATTTAGAGATGGCCACTAATAATATTTTCATGTATTTCTTTGTAGTGTATTGAAAAAAAATTTGGATTATACTGTGTGTCTGTAATACGTGGTCTTTGTCACCTGTTTTGTTTAATAATTCTGTTAATTCTTTATACATAACTTTTTTTATATTTTTAGTTGCTATGGTACCAGAATGTGGTACCACCACAAGAATACAGAATTTTTTTTTCCTTCACGTCTTTTAAGGACAGATGACTACCTGATTTTGCTTAGTAGCCATTCACAGAATTACGTAGCCACTTTTTATTTTGTTGTATGCTAATAGAACCATAGAGTATTTATTTATCAGTGTATTAATTTATACTTTTTTAAAGCATTTGATCCTATTTAAAAGTCAGAGTTCTCACTCTAGTACTTGTTACTAGTAAAATACTAATACCAACATGTACTCTAGTATTCAGGATTTCTGAACAAATTCATGTTCATCTTGTCCTTGTTATTCATTATTTTACAGATTTTTAACAACTTTTAGTCCTTTACCTTTCTAGAAAAAGGATCAATCCAAATATTCGGGGTCATGCATTTCTACCAGTGTGGAAATTTTAAGTTTTCTGTACCTATCTTAGCTATGATATTGTATTAATGTAATTTTTTGTTTGTTTCTGCTATTCACTGACAGTCATCCTAAAAAATATAATAATATTCACGTCTTACAATTTTATGAAAGAATAATTTCATTTAAGCATGAGCATGATAACAAATAGTAATGCTAAGTGGCACTTATTCAAAACACATACACCCAAATTCAATGTAAATGGTACACTATGGTTTTTGCCTTAGAAGGGAAAAAGCATCCCTATTTGACTTTACTGGTAAAGTAAAACAGAATGGTAAAGAATATCATAATATTCTTAGTTACTGTTTGGTTGTTTATATATATACACTTAGTGTATATGCATATGTATGTATGTGCACTTATGTAAATATCCATGTGTGTTCTGGTATCCTGCTTTGATTTTGGAAATTATCACATCTTAAAATACCTGCAACAAAACTTGGAATATTGTCTTTCTAAGGCAATTGATGCATAGTTTCTTTCTTGGTTTAAGATAGAAACCACAGTGAATTTTCTAATACTAATGTTGTATCCATTGAAGAAGTTATCACTTTTCAACATCTGTGTATACATATATAAACACATACATATATGAACGTGTATATGCATGAGGTCAGTTGTATCATTTTTACTTATTCAAAAATGCATTAATTTACGTATCAAGTTTATTGCATATCAAATTAATGCATTGCATAAATTGATTAATTTACACTTTTTAATAAATTCTTGCATTGGCAG
Seq C2 exon
TGAAATCGACAAGAACATTGATTATATGTCAAACTTGAGGAGAGATAAATGGGTGGTAGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636:ENST00000392783:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCTCTTGGAGAACATTTGC
R:
TTGCGGAGTTTACCTTCTACCAC
Band lengths:
286-1760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development