MmuINT0024151 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59760200-59761812:-
Coord C1 exon
chr2:59761598-59761812
Coord A exon
chr2:59760275-59761597
Coord C2 exon
chr2:59760200-59760274
Length
1323 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATACATTTTTGTATTGGCAGTGA
3' ss Score
3.95
Exon sequences
Seq C1 exon
GCAAAAACAGCTCTGGGAGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAG
Seq A exon
GTAAGTGAGCTCGTTCCTGTTTTGAAGAGCATAGGGAGATAGCCAAATTGCTTATAGAAAACTTTGGAGGTATAGACTAGCACCAAGAAGAAAATCAAAATCATAAATCATCATTTAGAGATGCCACCAATACTATTTCAATTTAATTCTATGTGCTCTATTGAAAATAATGATCTTTCTGTATGTTTGAACTCTGTAGTCTTTCTGCCCTGTGTTGTTTAAGCATTTTGCTAATTCTTCGTGTGGTGGAAACTTTGTTTTATTGTTTGGTACAGTGCTGGATTCCAGAACCATGATAGCAGTGCAGAATTTCCATTCTTTAAGGACCCGATTTCCCTTAGAAATCCATAAACTGACTCAGCCACTACTTGGTTGTGTGTTCCTATAACCCTCTATTACTAGCTTGCCAGTGAATTAGTTTATTCCTTTTTTTTCAAAAGTTCTTAATCTCATTTAAGATTCCAAGTCCATCTGGTACTGTAGTACTTTTTATGAAGGAAAGAGTTAGCATCTCAAGTTCTGGCTTCTCAGGTTCACCGTTCATCCTGTGCTTGGTCTTCATTTGTTTAAAAAATTGAAATACATTACTTTTAGTCTTTTACCTTTAAAAACAGCGTTCGAAAGTATTCCGTGCCATTTATTTGTGGTGTTGGTGGGCATATGGCTTCTGTCCATATCTTAGCTATGATATATTAACATGATTGTTACTTACTTCTTGTATTCTTTGGGAGTATTTCCAAGAATGTAATAATACAGCTTTGACTGAGGGAATTCTTGGACTTTGCATAAGCATGATAATAGTACTAATGCTGAGTGGCTCTTCAGACGTTTGTACACACATGTAAACTCAGCATACAGAGAGCACTAGCATTTGCTGTTTCAGAAGAATAGAGGCAGCACTAGTCTGTCACCACCACCTAACACCACACTTTTAGTTTCCATTTGGGCATGTGTAAAGTGATATTCCCTGTGAACCAGTATACACTTAAATAAATATCCGTGTACATCCTCATTTCCAAGATGAACTTGGAAATGATCACTCCTTCGATATATACCAACCACATCAGAATGCTGTTTTTATGAACAATTGTGAAATGGTATTACAGCGCTGTATTTTTGAAACCAAAGTAAATTTCCTAATAGCAATATTGTATCCAATGAAAAAAATGGCTGCTTCTTAAAGTAAATGCCCATATGTGCATAAAGCCGTGTAGCAGTGGAATGGTGTTGTATCATTTTACCTACTAAAATAGGTGATTATGCCTACTAAGAAGGTACCTTGCATAAACTGATATATCTCTTCATACATTTTTGTATTGGCAG
Seq C2 exon
TGAGATTGACAAGAACATTGAATACATGTCTAACTTGAGAAGAGATAAATGGATGGTGGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PU(1.0=5.6)
A:
NA
C2:
PF0334410=Daxx=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAACAGCTCTGGGAGAAC
R:
TTGCGGAGTTTACCTTCCACC
Band lengths:
290-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: