DreINT0036879 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11751048-11754134:+
Coord C1 exon
chr6:11751048-11751315
Coord A exon
chr6:11751316-11753978
Coord C2 exon
chr6:11753979-11754134
Length
2663 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGGTTTTGGCTGTTTGGCAGACA
3' ss Score
5.23
Exon sequences
Seq C1 exon
GTGAAGCCAGGTGCAGCTCTGGTGGGTTTGCCTTTGTACAGCTGGTCTGGTGGGGTCATCAGCCCCAATCTCCCCCTGTGCAGCAGCCCCCTGCACATGTACCCATCAGTAGAGGGCAGCGCCAGCCCCCTCCTGGCACCCAGCGTCTCAACCAGCAAAAGTGGCTCTCCTGTTCCCACCGCGGAGAAGCTGGCATCTGCTCCTTCTCCAGTGGCGCTGGACCTTCCCAGAAATCATGACCTGCCTGAGCCAATGGCCATACCAGAGG
Seq A exon
GTGAGGGAACTAGAGTAATTATTGAACCTCTAATTTAGACCTGTCACCATAGCGATGTCAATTTTGTTGTGCTATATATATATATCTATATCTATCTATCTATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATAGTCACAGAATTTATTGTGATACATGATGTTATTGTTGCCTAATGGTTATACAACAGCAAAAGGTCACACTTTATTTTGATGGTCAATTTGTTGAACTTAAGTTACATTTCATCTACTGTAAATGCCAATTAATTCTCAGTAGATTATAAGTAGAATGTTAGGTTGGGGTTAGGGTTGGGGTTAGTGTAAGTTGACATTTATTTGCAAAGATTCTTACCCAGCAAAATAATGCGAATAGGCATAAACACTTTCAATTATTAAGGTTATTTAGATTCTGTAATTTGAGTTTTTTTTTAAATAGCAAATATCCTAATATAAACTTTGACATCAGCGAATGTAAACGTCCCCGGAAAATGGTTGTAAAGTTTTTTGTGCTTGTGTTATTTCTGGAAATGCGCTAAGCTATGAGAAAGAGCTCATTTACACTGTAAAAAAAGGCTGACTCCCACATAACTTCTTTATGTTGTTCCAACACAAATCAATTACATTAACTTAACAAATTTAAGTGGATTGAGCATAAAACAATAAGTAGTCCTAAAAAAATTGTGTTGATTTAACACATGTTAAATAAGTAGTTTCAACAAGCAGCAAGTTAGACGATATAGACAACTATCTGTCACTAGTTTTCATTAAAATTCAGTAAAACTATCAGAGTTTTACTATATACGAGTTCACTCAGCTCACTGACACAGAGGATGTGCAACCAGCTGAAACGTTACTGGCAATTTTTCCTGTCTAAACATGATGGGCGATATACAGTTGAAGTCAGAATTATTCGCCCCCTGATTTATTAGCGCCCCTGATAATTTTTTCCCCAATTTCTGTTTAACGCAGAGCATATTTTTCCAACACATTTCTAAACACAATAGTTTTAATAACTCATTGCTAATAACTGATTTGTTTAATCTTTGCCATGATGACATTAAATTATATTTTACTAGATATTTTTCAAGACACTTCTATACAGCTTAAAGTGAGATTTAAAGGCTTAACTAGGTTAATTAGGTTAACTGGGCAGGTTACGGTAATTAGGCAAGTTACTGTATAATGATGGTTTGTTCTGTAGACTATCGAAGAAAAAACTATAGCTTAAAGAGGCTAATAATTTTGACCTTAAAATGCTTTAAAATAATTAGAGGCACCTTATTGATTGAAAGAATTTGAATAATTAATATTATTAAATATTACACCTGCTCAATAAATATCAGATGATTCACTACATTATCAAATCAGACATAACTTGATCAGAAATATAAAAATAGGAGAAAAATTTTAAGACATCATAGTCTTGCAGGTAACAGGTAACAGTGCAATGCTTATTTTTTTTATTCCAAATGCATAACAATGCCATTGTGTCCAGTGGTCAGCTTTTTGCATTACGACGCCGTCGACCCGAGTTCAAACCTCACCTAAATAGTATTTTTTATGTTTCATTTTTAGTGTTAATACATATAAAACTGTTTGGGTTACTTATATAGGTGTACATATTTTATTTTTATTTTTTGTGTGACAACCGTTACAAAGGAATATATATTCAGGTATTGCAGGAAAGGACTTTGTGATGTTTTAAAGAATAGTGTTGGAGATTCAGCTACCCTTTAATGTTCTCATATTTATGAAAAAACATTTAAAGTTCTAAAGCAGCTGTTTCCTTGAAAAAGACATGATAGTGTCATTAGAAACTGAATTAGAAATGACGTTATTTTAATATAGTCGTAAACTGAGGTGGGCCGGTCTAAGGCTTGAAACTCCAGGGCTGAAAAGGAATCCCACTCCGGCCCTTTATAATGCTATTGTAAAATAAAATTACTCTCATTTATAAAACTACTCGTATATTATATAATTTCTCTATGGACACAGCATAGTCAGATTTGCATTGTATTTAGATTGTTTTATACTGAAACATCGTGTTATACTACTAATTTACACCTTTTACCCCTTCTAGATTTGAAGTACAGTACAGAAACTGATCTGGTCCTGTGACATTCATACATTTCAGTTAGTTCTGTCGAATGATTAATCAAGATTAATCAAATGAAAGGTTGTAATTTATTTATATGTTTGTGGGTACTGACTGCTTTAATTATGTGTATATATAGTAGACATACAAATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTAAATAGCTTTTAAATGTTTGTATTATGTAACTACAAACTTTTATTTTGATTGCAATCAATGACGATTATTTGTTTGACAGCACTCATTTTTAATCAAAACATTTATAGATCTCTAGCCCAAAAGCAACAATACTTTAAGAGCTTCCTGGAAAAAAAAGATCAAAACCTAAATGTGTGAAATGTGCAACATTTACCCATAATTCTTAGCAATGCATGTGTCATGAGTGGAGTTTTGTTTGGGGTTGTTGATGTTAATGGTTTTGGCTGTTTGGCAG
Seq C2 exon
ACATGCTGCTGGGCTGGTGGAAGGTGACAGACATGGAGGAGCTGAAAGCGCTAGTGAACTCTCTTCACAGCAGAGGTATCCGAGAGAGAGCCCTGCAGAAACAGCTGCAGAAGTCCATGGAGCTCATCGTACAGACCTGCAACAAGAACCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]