RnoINT0024833 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45982255-45982855:-
Coord C1 exon
chr3:45982579-45982855
Coord A exon
chr3:45982411-45982578
Coord C2 exon
chr3:45982255-45982410
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TAAATACTGTCTTGATGCAGAGA
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTGAAGAGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGTGTGCTCACTTCCAGTGTCCCATTTACATCACCCTTGCCTGGTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGTAGCAGCTCATTCTTGAATTCCAGTGTTGCTTCCAGTAAAAGTGAATCTCCAATCCCTCCAGCTGAAAAGGCCTCCACCGCCACACCAGCCGCTGTTGAAGTAGCAAAACCAGTAGATTTTCCTATTCCGAAGCCTATCCCAGAAG
Seq A exon
GTGGGTCCAACACGACGGCCTGCACCCCCTTGCTGTGCCTCGGGGACAGCTCCTCATCTGAAAATGCATCTCCGATGGATCTGTGTGGCTACAAATCCTGAGATTTGCTTTATGTCACTATTTCCTATTCAAAATCATATAAACCGTGTAAATACTGTCTTGATGCAG
Seq C2 exon
AGATGCAGCTCGGCTGGTGGAGAATCATGGACCCCGAGGACCTGAGGACGTTGCTGAAGGTGCTGCACCTCCGAGGGCTACGGGAAAAGGCCCTGCAGAAGCAAGTGCAGAAGCACCTGGACTACATTACTCACGCCTGTGCCAAGAATAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCTCCAGCTGAAAAGGC
R:
CCTTATTCTTGGCACAGGCGT
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]