GgaINT0050424 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36061726-36062315:-
Coord C1 exon
chr7:36062039-36062315
Coord A exon
chr7:36061882-36062038
Coord C2 exon
chr7:36061726-36061881
Length
157 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTATGTTTCTCTTGCTTTAGAAA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CAGATGAAGCCTGGACTACCTGTCATGGGACTTCAGTTTTGTGGATGGCCTACAGGAGTTCTTACTTCAAATGTTCAGTTTTCATCTCCTTTACCTACTCTTGGATCAGGGTTGGGATTATCAGAAGGGAATGGTAACTCATTCTTGACATCTAGTGTTCCTACAAGTAAAAGTGAATCACCAGCACTGCAGACTGAGAAAGTAGCTTCTGCCACCTGTACAGCAGTGGAAGTGGCCAAGCCAGTAGATCACCCAAACCCAAAACCAATACCAGAAG
Seq A exon
GTAAGAATGAGCAATCAGGTGGAACTGTCTGGATAATTTGTAGTGCCTCTATGCTGTGTTACAGTTTATTTTTTCTAATTTCCCTATTGAATTTCTCTAATCTGATTGTAATCACGTGAAAAACACCTGATAAGTATTTATGTTTCTCTTGCTTTAG
Seq C2 exon
AAATGCAGTATGGGTGGTGGAGGATTACTGATCCTGAGGACCTAAAATCTTTGCATAAAGTGCTGCATCTCAGGGGAATAAGAGAAAAGGCCTTACAAAAACAAATACAGAAACACATGGACTATATCACTCTGGCCTGCATCAAAAATAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACCAGCACTGCAGACTG
R:
TTTTGATGCAGGCCAGAGTGA
Band lengths:
249-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]