DreINT0001857 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52408928-52409625:+
Coord C1 exon
chr9:52408928-52409186
Coord A exon
chr9:52409187-52409469
Coord C2 exon
chr9:52409470-52409625
Length
283 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TATGTGTTATTGTGTTGTAGAGA
3' ss Score
8.33
Exon sequences
Seq C1 exon
AAGTCTGGCATGCCCATATTAGATCTGCCGTTCTGCGCTTGGCCCAATGGAGGTTTGAGACCAAACATGTCGTTCTCTGGGGTCTCCATGGCTCAGATTCTCAGTGGTTGTGGTCTGCTTTCAGAGGACACTAAAAACCTGAGCAATAAAAAGAGTGAAGCTCCTGAATCTCCAACAGAGAAAGCCCTCTCTACACCTTCACCTGTGATCGAGGCGGTGAAAAACCATGATTACCCGTTACCGCAACCCATTCCTGAAG
Seq A exon
GTAAAACAGAACAAAACTATGCTATGTTATAAAAAGGCTTTATGTTATATATATAAAAAAACTATATTTTTAATATACTATATGAATTAGTAAGAAAAGACTGGTACAGTGATTTATTCTTTATGTAAAGCATTCTAAATTGCTATTGTGTGTGCGAAGTGAAGAAATAAACGTGCCTTGCTTTGCCTTGATTACAATCATCTTTTCAAGCATTTTAGATGGTAAAATCTGTAGATGACCAGATTCTCATCTCAGCAAGCCTATATGTGTTATTGTGTTGTAG
Seq C2 exon
AGATGTTGACCGGCTGGTGGAAAGTGTCCTCTGTGGAGGAGCTGCGGTCCATAGAAAAAGCCTGTCATCCCAGAGGGGTTCGAGAGAAGCAGCTGCAGAAACAGCTGCAGAAACACATGGACTATATAGCTCTGATCTGCAGCAGAAACAGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=73.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTCGTTCTCTGGGGTCT
R:
TTTCTGCAGCTGCTTCTCTCG
Band lengths:
296-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]