HsaINT0016839 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160205189-160205791:-
Coord C1 exon
chr2:160205518-160205791
Coord A exon
chr2:160205345-160205517
Coord C2 exon
chr2:160205189-160205344
Length
173 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ACTTATTTATCTTGACTTAGAAA
3' ss Score
5.63
Exon sequences
Seq C1 exon
GTGAAAGGTGGAGTATCTATGATGGGACTTCAGTTTTGTGGATGGCCCACTGGTGTGGTTACTTCTAATATTCCATTTACATCATCTGTACCTAGTCTAGGATCGGGGTTAGGGTTATCAGAAGGAAATGGTAATTCATTCTTGACTTCCAATGTTGCTTCAAGTAAAAGTGAATCTCCAGTACCACAGAATGAAAAGGCCACTTCAGCTCAACCTGCAGCTGTTGAAGTAGCAAAACCAGTAGATTTTCCTAGTCCAAAACCTATTCCAGAAG
Seq A exon
GTAGGTACATTGAGATGGTTTACAGCCACTTACTCAATTTCAATATTATGGATTCCTGTATTATAACTGAATATTTGATGGTTCTATATATAGTTAATAAATCTTTTTATTTCCATGGTGTCATTTCCTATTCAAAATATTTGTAAAAGTTCTACTTATTTATCTTGACTTAG
Seq C2 exon
AAATGCAGTTTGGTTGGTGGAGAATTATTGACCCAGAGGACCTAAAAGCTTTGCTCAAAGTGCTGCATCTCAGAGGAATAAGAGAAAAGGCATTACAAAAACAAATTCAGAAACATTTGGATTATATTACTCAAGCCTGCCTCAAGAATAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGATCGGGGTTAGGGT
R:
TGAGATGCAGCACTTTGAGCA
Band lengths:
252-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)