BtaINT0025102 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37125885-37126235:+
Coord C1 exon
chr2:37125885-37125904
Coord A exon
chr2:37125905-37126067
Coord C2 exon
chr2:37126068-37126235
Length
163 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACATATTTATTTTAACTTAGAAA
3' ss Score
4.7
Exon sequences
Seq C1 exon
TCCAAAACCCATTCCAGAAG
Seq A exon
GTATGGTTTATAGTCACTTACTTAATTTTATTGTTATAGATTCCACATGATAACTGAATCTTTGAGGATTATATATTTAGTTATAAATCTTTCAATTTGCATTGTGCCATTAATTCATATTCAAGATATTTATAAAAAGATCTACATATTTATTTTAACTTAG
Seq C2 exon
AAATGCAGTTTGGTTGGTGGAGAATTATTGACCCAGAGGACCTAAAAGCTTTGCTCAAAGTGCTCCATCTCAGAGGAATAAGAGAAAAGGCATTACAAAAGCAAATTCAGAAACACTTGGATTATATTACTCAAGCTTGCATTAAGAATAAGGATGGTATGTACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=70.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]