DreINT0040138 @ danRer10
Intron Retention
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71626789-71632599:-
Coord C1 exon
chr7:71632480-71632599
Coord A exon
chr7:71626912-71632479
Coord C2 exon
chr7:71626789-71626911
Length
5568 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTCTCTTTGTTCCTCTACAGAGT
3' ss Score
10.59
Exon sequences
Seq C1 exon
GGTTCAGCAGACTCATACACCAGTCGGCCATCAGACTCGGATGTGTCTCTGGAGGAAGATAAAGAGACTTTACGCAGAGAAGCTGAGAGACAGGCTCAGGCGCAACTCGACAAGGCCAAG
Seq A exon
GTACAAACATGTTCATTCACTTACAGTTGAAGTCAAAATGATTAGCCCTCCATGAACCGTAATAATACCCATAATTCATTGTGTAGCCTAAGCCCTCCATGAACCGCCACCTTATCGTGGTGGAGGGGTTTGAGTGCCTGAGTGATCCTAAGAGCTATGTTGTCGGGGGCTAATGCCCCTGGTAGGGTCTCCCAAGGCAAACAGGTCTTAGTTGACAAGTCAGACTAAGTGCGGTTCAAAAAACCCCTTATGAGTACGAGGACTGTGACATCGCCCGGTATGGCGCAGCCGGGGCTCCACCCTGGAGCCAGGCCTGGGGTTGAGGCACATATGCGAGCGCCTGGTGGCCGGGTTTTTTTCCCACGGAACCAGGGCGTGCTTAGCCTGAAGGAGCGACGTGGGACCATCCTTCCGCAGGCCAACTACCTTTAGGGGGAGCCGTAGGGGGCCAGTGCATTGTGGAACAAGAGGTGGTCGAAGCTTAGGACCACGACAACCCGATCGTCGGGCACAGAAATGATGTGGCATTACTGTGGAGGGTGCTGGGGGAGTATGGGGTCAGAGGGGATCTGTTGAGGGCCGTCTTGTCCCTGTATGAACAGAGTAGGAGTCTGGTTCACATTGCTGGCAATAAGTCAGATTTGTTTCCAGTGCATGTTGGACTTCGGCAGGGCTGCCCTTTGTCACCAATTATTTTCATAATTTTTATGGACAGAATTTCAAGGCGCAACCTTGGGCTGGAGGGGGTCCAGCCCATCAAACATGTAACTTCAGCATGCACTGGAGTGGTTTGCTGCAGAGTGTGACGTGGCTGGGATGAGAATCAGCACCTCCAAGTCCGAGGCCATGGTGCTCCACTGGAAAAAGGTGGTTTGCCATGTCCCGGTTGGAGGAAAGTCCTTACCCCAGGTGGAGGAGTTTAAGTATCTCAGGTTTTTGTTCACGAGGGAAGGATGGAACGTGAGATTGACAGGCGGATTGGTGCAGCGGCAGCAGTAATGGGGTTGATGTACCGGTCCATTGTGGTGAAGAAGGAGCTGAGCCGAAAGTCAAAGCTCTCGATTTACTGGTCAATCTACGTTCCTACTCTCACCTATGGTCATGAGCTTTGGATCATGACCGAAAGGACAAGATCTCAGATACAAGCGGCTGAAATGAGTTTCCTTTGAAGGGTGGCAGGGCGCACACTTATGGATAGGGTGAGGAGCTCTGACACCTTGGAGGAGCTCAGAGTAGAGCCGCTGCTCCTCCACATTGAGAGAAGTCAGCTGAGGTGGCTCGGGCATCTGTTTCGGATGCCTCCTGGACACCTACCTAGGGAGGTGTTCCAGGCATGTCCCACCGGAAGAAGGTCTCGGGGAAGACCCAGGACACGCTGGAGGGACGATGTCTCTCGGCTGGCCTGGGAACGCCTCGCGATCATCCAGGAGCTGGAGGAAGTGTCTGGAAAGAGGGAAGTCTGGGGTTCTCTCCTAACACTGCTGCCTCCGCGATACCGGAAAAGCTGCAGAAAATGAATGAATGAATATTTGCCAAATGATGTTTAACAGAGCAAGGAATTTTCCACAGTATTTCCTGTAATATTTTTCTTCTTGAGAAAGTCTTATTTGTTGTATTTCGGCTAGAATAAAATCTGTATTAAATTTTTTTAAAACCATTTTAGGGGCAATATTATTAGCACAGGCCTATCTAAAGTATTAATGCTGCCAACTGATGATCAACAGTAAAAAGACACATTTTACCTCCTCTCAACAGGGAAAACCAGCAACAATCAAAAATGCATGCTCATATGCTGTCAAGGCTTTGCAATTAAACAATACCATTGCAGTGGAAGTCAATGGGGCAAAAACAGCCACCAACATAACCAAAGAGGAGTCAATTTAAACAGTGCACAAGGGTTAAGATGGTAATATATTATTTATATATTTTTTACCCAACGCTGGTACCCAAAGCTTCATTAAACTTCTTTATGAATCCTGCACTGACACCCGTACCACATCTCTGACTCTCTAAATTATTCAAATACATTCACAGAGCCTTCAGGGTTTGTCTGGACAGCGAGTGTCATCATCTTCCAAGGCTATTTTAGTTCATTTATATCTCTGTGCGTTTTCTTTCTCCGAGGCAAATGAAAGCAGCTGTTTTTAGAGGTGATATAGATATAAATATATGAGCTCTCAGCCTATTAGTGTTTGCCATCTATTTTTATTCTTCTGTTTACACTTGTTTTTGTCGCACTCTCTTTCACCTCTGGGGACAACAGCTATATTTAGTGCTTGGCATCAATCTGATTTGATCATTTATTTATTCTCGCATTAATATTGATCATGAAGCCAGCTGGCCTGCAGTGAGCTGACAGAAGTAAATATGCTCCGCTGGCCAAGTAAGTTTACTTGCAGATATTTTCTTTTAGTTTCCCAATTTAGGGCGTCACGGTGGCACAGTGATCGCCTCACAGAAAGAAGCTCGCTGGTTCGAGCCTCTGCTGGGTCAGTTGGTATTTCAATGTGGAGTTTGCATGTTCTCCCTGTGTTGGCATGGGTTTCCTCCGGAGTTCCTCCCACAGTCCAATGAAGTGGTATGGGGGAATTGGGTAAGCTAAATTGTCTGTAGTGAATGAGTGTGTATGGATGTTTCCCAGTGACGGGCTGATGAGCTGGAAGGGCATCCGCTGCATAAAACATATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGAAAACCCCAGATTAATAAAGAAACTAAGGAGAAAAGAAAATGAATGAATGAATGTTTAACTGGTGCTGGGCAAAAATTAATCGCGATTAATTGCATTAAACTTAAAGTTAGTTTTGATCATGTTTCTGTGACGGTCGTGGTTAGGGAAAGGAGCGAGGACTCAGGTGCAGCAAATGATGGGTATTTATTAATAATAAAATTAAAATAAAAGGCAAAACAAAAACTACCCCGAGGGGGGAAACATTAACAAAACACAAACAAACTTGGCTGGGCTGGCAAGACAAGACTGGAGCAGGCACACAGGGGGAGTGTAGATGACAAACTGGCACAGAACAGAAGACATGAGGAGATTATAAGCAGGAGAAAATTAACACACAACAGATGAACGTAATTTTACTAATAATGGGTTAACAAGTGGGGTGGGACTAGACAATAGACGGGAGAGCGCATGACAGAGACAAGACATGCGCTCACATAAAACAAGACAAGAACATGCAGCCAATGAGAGAGCTCATTAACCGCATGTTCATGACAACACTGAAGCACACCACAAAACCACGTGACCACAATGTAAACACAGAGCCACATGCTTTGACAACAGACGCAAGACACAAGCACACGATAGATAAACACCTTACCGTGCGCTCACACATATGCAACGCGCATGCTTAATCTCAGCGCCAACCAAAACTTAAACCAACTAGACGTAGGCGCAGAGAATGAAGCAGCGCGATGCTGACAGAACAAACACAAACACTAGTACAAAAGCGCGCATGTCCGAGGCACGCAGGGCCCACGCGGCCGCATCAAGCGGGAGTGCGCGCGCACACAGAGACACACACAATGACAGAAACAAGTGCTTGACCCAAGAAAACTTGAGCCGAGCGCAACAGGACAGGACTAGACATGACTAGTGTCCGGACTCTGCCACCAAAACAAGAATTTACATGACCAGAGTGGCAGAACCCTGACAGTTTCCTATGTATTGTTTTAAAGAGACGAAGAAGCTTCTAATCTCATTGGAGTGTGTCTTCTGAGATACTGTGTGCAGCAGTATTATTTTTTTCTTTCCTATCCAAAATGGTAAAAATCTAAAATTCTCTGACCACATTTCTAGAACTGCTCGATCGTGCAGATTCGCACTCTATAACATCAGAAAGATCCGACCCTTCCTATCTGAACATGCAGCTCAACTCCTTGTTTAGCTCTTGTTCTCTCCAGACTGGACTATTGCAACTCTCTACTAGCCGGGCTTCCAGCTAACTCTATCAAACCTCTTCAACTGCTTCAGAACGCAGCAGCACGAGTTGTCTTCAATGAACCTAAAAGAGCACATGTCACTCCGCTGCTCATCCGTTTGCACTGGCTGCCAGTTGCTGCTCGCATCAATTTCAAAGCTCTGATGTTTGCCTACAAAGCGACTTCTGGCTTTGCTCCTTATCTGCTCTCACTTCTGCAGATGTATGTGCCCTCCAGAAACTTGCGTTCTGTGAATGAACGTCGCCTCATGGTTCCATCCCAAAGAGGGAAGATATCACTTTCCCGAACTCTCGCGTTCAATCTGCCCAGTTGGTGGAATGAACTCCCTAACTGCATCAGAACGGAGTCACTCGCTGTCTTCAAGAAACGACTAAAAACTCAACTATTTAGTCTCCACTTTACTTCCTAATCTGCAATTGCCTCTCTGGCTCCACCGCTAACTGTATTACAAAAATAAATGACTAATGTTTTGCTTCTTACACTTTACACACCTGAAACTCGCCTACAGCACTTATTCATTGCTGCTCTTATAGTTGTGTAAATTGCTTCCTAGTCCTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAAGCAAACATGCCAGCCATGTGTCTGGATACTGAATGAAACGGTGTGTTCATGATCAATACTGCATGTATAACGGAAAGTGGCGTTGCGTAAGAGGCAAACGCTGGCTGTGAACACAAAACACAGATTTATAAACAAAGCAAAGTATCAAAAGCACAGCGCAAAATATCATTCAAAGCTCTGGTCCCACATATCACATCACATGGCTTTGGATTTGCATGTCTTTTTATTTGATCGGAACATAAGAAAGGGAAGCTAAAAGCATCAGTGTTTTGACAGATGATGGAGACTCGTGAAGTGTGTGTGCGTGTGTCTGTGTGTGTATCTGCAATCCTCATTACTATTAGAGGACACCATGTCCTCTGTTTGACATACCCATAATTCATTGTGTGTGCAGAGCATCATGTAATGTTGACTCCATACTGATTTCACCCTTGTGCGTCAAACACTCTTCTGTTTCGCCGCACACGTTGAAAAATTGACATTAAAATTATTATTAATGTTTTACATTTTATCAATTCATATTTTTTAGTATTATCAGGTTTAATAAATAATTCATAAACTCACATTCAGTATGTCAAGTTTTGTATTTATTCATTTATTTTCCTTCAGCTTAGTCCCTTATTTATCAGGGGTCGCCAAAGCGGAATGAACCGCCAACTATTCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCCGCAACCCAGTACTGGGAAACACCCACACACACTCATTCACACACACTTATACACTTCGGCCAATTTAGTTCATCCAATTCCCCTATAGCGCATGTGTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACACGGGGAGAACATGCAAACTCCACACAGAGATGCCAACTGACCCAGCAAGGGCTCAAACCTGCGACCTTCTTGCTGTGAGGCGACAGCGCTAACCACTGAACTGATTATTAATATTTGATATACCGTATTTTCTCTTTGTTCCTCTACAG
Seq C2 exon
AGTAAACCAGTGGCGTTTGCAGTGCGCACTAATGTTGGCTACAGTGCTTCTTCTGAAGATGACGTCCCCGTGCCTGGAACGGGAATCTCATTTGATCCTAAAGATTTCCTTCATGTTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045:ENSDART00000168754:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(52.9=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]