DreINT0040896 @ danRer10
Intron Retention
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4563125-4563398:-
Coord C1 exon
chr21:4563307-4563398
Coord A exon
chr21:4563216-4563306
Coord C2 exon
chr21:4563125-4563215
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTCTGTTATTCTGTGAGCAGAGC
3' ss Score
5.16
Exon sequences
Seq C1 exon
AACAAACAGAAGCCCCACCCACAGCCCCTTCCACCCGCTCCTCCCACTGCGGCAGAGACAGCAGAAGCCCACTCAAGGGGACGAGATTTCAG
Seq A exon
GTAACAATCAAAACTAAAGCTTAACTAGATGATGAGATTGATTGCATTGATTAGTTCCCTCTCTAATGTGTCTCTGTTATTCTGTGAGCAG
Seq C2 exon
AGCTCAGGAACAGGTCAAACTCTTTATCCCGTATGGATGGACTCGGACTTGGGCTTGGATCACAGCTTTCCTGGACAGATCGGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208:ENSDART00000137404:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.874 A=NA C2=0.720
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAACAGAAGCCCCACCC
R:
TCCGATCTGTCCAGGAAAGCT
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]