DreINT0040939 @ danRer10
Intron Retention
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22347606-22351249:-
Coord C1 exon
chr22:22351091-22351249
Coord A exon
chr22:22347687-22351090
Coord C2 exon
chr22:22347606-22347686
Length
3404 bp
Sequences
Splice sites
5' ss Seq
AATAAGGTC
5' ss Score
-27.45
3' ss Seq
GTTTTACTCTTTTTTTCAAGGTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
AGCGCCCACCTGGCCATGATCGACACTCTGATGATGGCGTATACAGTGGAGACGGTGAGCGTGGAGAAGGTGATGGCCTGCATGCACCAATACTCCACCGATTATCCAGACGGAGACGTGCCCTACGACACAGAGGATGCCGTCACCAGCTGGATGAAT
Seq A exon
AAGGTCATTTTGGGAGGTTTCAATACTACAATTATGCACAATGCTTTGATATGACATTGTCTTGTTCATGTTTTTAAAGCCACTTTTCTACTGCGCTTTTTGTATCTTTCAGATTTCTTTAGTCCAGTTTTTTTCAGCTGGGTTTGCATGTTTAAATTGGATTTAAATATTGTTATCGTTATACTTATTGTTACAGTTGAAGTCAATTATTTGCCCTCGTGTGATTTTCAAATATTAGCAAATACTTTCAGATTTTATTGAAGGATTTTTGTTTAATGCTGAAAACAAGATAAACACATTTATTATAAGACTCCTGACAGTGATTGCCTTCATTTTCAGAGCTGATGCTGTTTCCTCAAATCGAGTTAAAAACAAATTAAGCATACATAAGCTATAGTTGGACATTTTTCAAAAGCTCACTGTAACCGATGCATCAAATTGCATTTTCAATCCACCTTACATACATTTCCAATGTAGGGCTTTATATAGTAAAAACCTTTTTGTCTGCCCCTTGTGTAGTCTCACCCCTCATACTAGATGGAAAGCAGTGGAAAAGCCCCCAAAAGTAATCGTACCAAATCAAACTGCACCATAGCATGCACTGGAAAAGCACCTTATCACAAGCTATGTTAATGCATTTCTCAAAACAATTAGACATTCTGTCACGATGGGCTTACAAAAATACAAAAGATATCCAAGTGCAGCAATAGAAGTTTTAATAATAAATAAGGGGACAGGCCAGGTTCAAAAATCGAACAGAGACAAAAGTACAACACAATAAACAAAGTGTATCAAACAAAGTTAGAACAGGAATTCAAAAATATGATCACAACATGAAACAAAGTGAACAAACAAACAAACAAACCAAAACGATGAGTCAGTGAGTAGACTACGTACAGATAAGAGCCGGACAAAACAAACCAGAATCGGGTGAACAGGGTGCACGAGCAAAACAGCAAAAATCCAAAGGCAAACTAAACACCACATAACAAGGCTTATAAAGACAACAATAATTAGACAATGACAGACAGCTGGAAACAATTAGTGATCACGTGAACTACAAAGCAGGAACAAACCAAAACATAACTAGTGTCCAGAAAACCACAAGATGGCACTACAGCAGACATGACACATTCATGCACATCTTAGTAGCAGTTTCTCATTTCTTCCAACAAATTGTAAATGCTTTTGGACATGCATCAATTATTTTTATACAACTCTCTGCTGTTTATAACATTATCATTTGCTTATGTCATGTCAGTCAAAATTAACTGAACTTGTGAATGCTGAATAGTCATGACATATAAAACTAATAGTCCTTATTTCTTTACTTCAGTCATTACAGACAAAAATGTTAAACTAGTTGTCAAATCTGTCAAGCTAATTTTATTTTAAAAATCAAGTATTTTTTCCCCTGAAAATGTCTTCTAAATTGAATAATTTCATGAATGATTACAGACCTGTGTGTGATGTAGGTTCAGTTCCAGTATGTACTGCAATATTGTTTACAGTTGTGCACAGCTCTACCCAATGGGAGTTTATGTTTGTTGTAAATAAGGGTGTATTTATTCTTTTGCACAATGCTGTGAATAAATTAGAATTGCAAAGAGAAAATGCAGTAAAAATGTGAAGCATTCATATTCAGTGTCTTGTACTCAGATGCCTCACTAAATGCAGTGATGTCTAACTTTACTGTATTTTTCAAATGGCTGTGCAAATAGTATATAGTGCTGTCTTGAGCATTTTCTGGAAGTGTCACCAAAATCAGACTTTTTTGCATTGGATTAAATGTCCAGAGTAAACTGACATAATGAAACAGGACAAAGCCATTTGACTAACAATGGTGTCAGGACTTTTCATCTTGACGACACTGACACTTCCATTGACCTCAATACTTGCTTTTGAGGAATGAACTCTCCATTTTGAGCAAGTGACCCGCTTTTGCAGGTTATCAGCTAGGTTTTGCAGTTTGTACTAATTGTTTTGTGAAACGCATTAACTGTTGTGCAATTGTAAATAATGTTGTGAGAAATGCACCAATGCCACTGAGAAAAACTGTAATGTCTTTGCTTAAGGAAAGACAAGATGTAAGCAGTGTGTGGGGTTTCTCTGCGAAGGAAGAGGACTCCAGAATTGCAATTTGTTAATGATTTTGCAAAAAGAAAGGTTTAAATGTTTATAGATGTGTTTGTTGTTGTTTCTAATAGCTTAAAATAAAGTCACTCCACTGTATTTGTTTGACTTTTGTTTTTGATATTAAGCTTAGAATTCTTTTTTTGTTATAGTTTTATATTCATAAGTGGTACAATTATCAGTCTACATATTGGTTATCGGCTTTGAGTTATAAACAAATATCAGTTTTGGCCTAAATATTTACATTAATGCAATTTATGTTAATTCACCCTCCCAAAAAAAACAAACTCACCTTTATGTCATTCCAAACCTGTAAGACTTTTATTCATCGTCAGAACACAAATGAGGATAATTAAAAAAAAAAGAGATTTCTGTTCCCCAAAAACTCTGACAACAAAACAACTTCAGCATGTTCATAAAGAGATCAAATGTGTGAAACAAGCAGTTTAATGTGCATTTTAAGATTTGATGTGGATCTTAGCATTTGTACATCCAGTTTTTTTTAACACCATAACCCAATATGAGCCTAAAATTAAAGAATTTGCTCTTATAACATGACTTAGTTTCCTGTCCCTGTATTGTCTCTCTGGGCATCTCTGGCCGTCTACGAAGGGACGTTTCTGGATATTTGTTTACATTCCTTTGCAGGCCAGCTGTACCGTCAGCCTAAATCCAGACACTACTGTAAATGTACACACACACACACATGCTAAATAGACCATGAAGGACTACATTTCCACATTTCAGGGACATTTATTTAAATGCAAATGCAGAATTTGTTATATACTTGAAATTAGTATATTTGTCACACTTTTAATTTTAAAAGTAACATGACTTAAAAATCTTAGACCAAGATACACAAATAAAAATACATTTTAAAGCAAGTGTTTTGTTTAGATATTTTTTTTCAACATTTAATAAATAGATTTTAATTTTGTGTTTTAAAAAAATATAATTTTAATTTAATGTAATACAATATAATGTAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAAATAATATAATATAATGTAATATAATATAATATAATTTAATTTAATTTAATTTAATAAAATTTAATATAATATAATATATCATATAACATAATATAAGCTTAAATAAGTTAACATAAGAAGGGAAACAGAAGTGTTTGGACTGAATATAATGGCAGTGATGTTTTTTTAATGCACAGATCCTCAAAGGCTCTTCTGTTTTACTCTTTTTTTCAAG
Seq C2 exon
GTGAATGAATACTTGAAGGAAATCATAATGCAGGAGCAAAGGCGGATGGAGGCGCAGAACGCAGAGCCTGTTGAGAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173:ENSDART00000142947:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]