MmuINT0028500 @ mm10
Intron Retention
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136297742-136304456:-
Coord C1 exon
chr1:136304295-136304456
Coord A exon
chr1:136297826-136304294
Coord C2 exon
chr1:136297742-136297825
Length
6469 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GGTGATTTTTACATTTTAAGGTA
3' ss Score
6.92
Exon sequences
Seq C1 exon
AGTGCACATTTGGCTATGATTGATACTCTAATGATGGCTTACACTGTAGAGATGATCAGCATAGAAAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATTGAGGATGCTGTCATGTACTGGATGAATAAG
Seq A exon
GTAGGCATGTACTTGATTGGATATGGTTCTAAGAACAGAAAACTGAAATCCTTGGTTGCACATTGTTCCTGTCTGGCTCTTTGTCTTAAATCAAAGTATAAGCTAAAGTTGTGCGATTTACTTGAAATATTTTACTTTTAAAAATATAAAAGCTGAACACGGTGGTGGCTCAGATCTGTACCCTCATCGCCTGTGAGGCTGAAGTGGGAGAGTCATTGAGTTCAAGGCCGGATTGGGCCGTACTGAGACCTGGTCTTAAATGAAAGTGTTGCAATGATAAAGCAGTTCTATATATCTACGAGTATCTGTAGTTTTACTTATTCTTAATAATGGCTACTCAGGGCTAATCAAGCTTGTATCAGATTATTACAAAACTCAGGGCACTGCACTCACAATAGGCCACATAGTGAGCAGGAACTACTCTTGGCTGGCATAATTCTCACACATTTCGGATTGGGAGAGTCTTAGATTTGTTTAACCAAATTAGACAAAATCATATTGATCGTGGATTCATTTTCTTGGAGATTTTTATGGTCTGTGCTTTGAACTGGTTACGTTCTTAATTTATTGCTCTCCTTGTTTTTTGAGTATTTAATTCTTCTTGACCCACATCCATGCATTCTGTTTTGAGGTAAGGTCTCACTGTGTGCACCTAACTGACCTGAAGTTTGTAGAGATCCTCTTGCCCCTGTCTCCCAGGTGCTGGGATTACAGGCTTGTGCCACCAGATGCAGGTGGCTCTACTTTCATTCAGTTGTCATTGCAGAGAAAATTAAACTACATCTGTGGACAGGCACTGAACAAATGTGAAATCACATCTTGAGATGTCTGGGCTTCCTTTGCTTGCATGAGCTTGTCATAGGCTAGACTGGGCTGGAGAGGTAGATGGCTTAGGACGTACAACACTTGCTGCATAAACATCAATCCACAGCTCAGATCTTCTGAAGCTGCAAAGAACTGGCAGCTTAGTTGTAGTCTCAATGCTTGGAAGCAGTGACGGGTCCTGTGAGGTCCTGAGTACTGTGGCCGTATCACACCCAGACGGCAGCATTTCACAGCGGTCTTGCCCTCTTCCAGCTCTTGTTTCTGTCCCACTTTCTGAGATGTTCCCTGAACCTTTTGGGGCAGGGAGTTAAAGAGATGTTCCATTTAGGGATGAACACACAACAATCACTTATTAACTCCAGTCTCTGCTTCAATGCTGCCCACACAGAAAGGAGCATCTCTGACCAAGGTGGAAATCAGCATAAACCTGTGAGAATAAACCTAAGTATTTAAAAGGCAGTTTGACAGGTGACCTGCCAGGCAGGTATGCCCACGGGTGCAATAGTGGCATGGCAGTCATGGGGCTGACAGAACCTCTCATGGATCGGATTTGATGCCTACTCATAGGAGGAGGGAATTCATGCCTGTAATGTAAACTTTGGCCAGTGCCTGTGGCTGGGGTGGCCGTATGCCTAAGTGGAAGCACTACTGCCTCAGTAAATGCTCCTGGAGGAGGAGAAAATTAACTCCAGCACCACAGGGAGCCCACCCATGGCGTGCACATGGCCAATGATATTGAACACCTTCAAAAATGTCTATAACCATTTATACTTCTTCTTTTGAGAACTCTGTAGTTCCATAGCCCCCTCTCTCAAGCCCCGCTGGTAATGTGGACAGCTGTTGGATTTCCTCAAAAGCTTTTTCGGAACCTGTGGAGATGACCATGTAATTCAGTCCTTGAGTCCATTTATGTAATTCATAACATTTATTAATTTACCTATATTGATCCATCTACGTATCTCTGGAATAAAGCCATCTTGATCATAGTTATGATCTTTTTTAATGTTCTTGAGCTGAGTTTGCAAATATTTTGTTGAGAATTTTTGTAACTATATTCATCAGGAGTTTGGTTTGTAATTTTCTTTTCTGTTGTTGTATCTGTTGTCTGTTTTGAATGTCAGAGTAATATTAGCTTTGTAAAAAGAGTTTAGCCGTGTTTCTTCCTTTTCTGTTTTATGGAGTAGTTTGAGAAGTATTAAGTTTGCTTCTTTTCTGAGACTCTGATAAGTATCAACAGTGAATCCATCTGGGCCTGGACTATATATATATTTTTTAATCTGAGATATTTTTCACTGCTGCTTCAGCCTCACCACTGTTAGCTCTTTTATAATTGTTTATCTCATTCTGATTTGATTTTGGTAGGTCATGTGCACCTAGAAATTCATCCATTTATTTTAGATTTCAGTTTAATGAGAACATGGTTTTAGATAAGACCTAAGGGTTTTCTGAATTCCATTGGCATCTGTTACAATGTCTCCCTTTTCATCTCTAGTTTTATTAATTTGTGTCTTCTCTTCCTCTTGGTTAGTTTGGCTGAGTTTGTCTTGTTTATCCTTCCAATGACCAACTCTGCGCTTCCTTGATCTTTGTTCTTTTTGTTTGGTGTTTTCATTTCTTTCCTCCTGCGCTGATATTACTGGTATCTGCCCAAATACTGAGTTAGCATGTGGCTTGTCTTTCTTTTTCCAGAGATTTAAGGAATATCATTAAGACATTTATTTGTGATCTCTCTGACTTGGAGACATAAATCACCCCCCCCACTCCCCCCCCCCCCCCACCGACTGCGGTCACTGCTTTCTGTAGATTTGGGTATGTTTAATTCATTGTCATTTGGTTCTAGGCTTTTTTTCCCCTTGGTTTCTTTTAGGTCTCCTTCCTCAGTCAGTTCTGTTTGGCTTAATCTCTCCATGAGCTCTAGGGGCTGTAGGGCTCATAGCCTTAGTACATTGTGATAAGGTAGAATACAAGAAATTATTTCAGTTTTCAGATATTTGTTGATTTGTTCTCTGTCCTGATGTATGATGCATTTTAAAAGAAAATCCCATGGACTGCTAGAAAAATATATATACTTTGCCACGTATGCATGGAATATTCTGAATATACATCTCAAATCCATGTGATCTGTGGAACATCATTCAGATGTTTCTTTTTGCCAAGATAACCTGTCTGTTGGTGAAAGTAGGTACTGAAGTCAACCACTGCTGTGCTGAGTTAATTTGTGGCTTTTCATTCATCTACTAATATTTGTTTTATGAAATTGCATGCACCTATGTAACTTCCTCTTGTTTCTTTAACCAGTTTGAAGTGACCCCCCCTCAAAAAAAGTTTTGGTTTGAATTCTGTTTTGTCAAAATCAGCAGCACCTGCTTGTTCCTTGGGTCTGTTGGCTTGGAATGCCCTTTTCCATCCTATCACTCCTAAGGCAGTGATCCTCAAAGGGTTGAGACCCCTTTGGTGGGCGTGTATCTAATAGGTATTTACATTACTATTTATAGCAGAAGCAAAATTACAGTTATAAGGTAGCAACAACATAATTTTATGGTTGGGGGGATCACCACAACGTGAAGAACTGTTTTAAAGTGTCATTAGGAAGGCTGAGAACTGATGCTCTAAAGTAATGCCTACTTTATCATGAGTTAGTGGTGTTGGTTTGCTTTGCTTTGCTTTGGTTTGGGTTTTTTTTCGACACAGGATTTCTCTGTGTCTCCCTGGCTGTCCTAGAACTCCTTCTGTAAATCAGACTGTTCTTGAGCACTGAGATCTACTGCCTGGGGCTCCTGGGTGCTGAGATCAAAGGCAAACGCCACCACTGCCCTGTGAGGCGTGTTTCTTGGAGGTAACAAGTACATGGCTTCTGCTGTTTGGTACACTGTGGAAGTTATTTGTCTTTCGATTGTGAAGTTGAGACTTAATAGTCAGAGTTATTATTGTAAAATTGTATATTGATTTCTGCTATTAGTCTTTTTACTATGGAAATTTTTTATCTTCACTTCAGTTGTGACAAGTAGCTTTGCTGGCACAGTGCTCTGGACTGGCTATAGTAGTTCTCCTTCAGAACTTGAAATACATCACTCCAAACCCCGCTGAACTTCCTGTAGACATTACTAATTGATTAACTGTCTCTTGTCACTCTCTCATCTCCATTCATACCCTGAAATTGTTTCTTTTGGTCAGTTAAAATCTCCATGCTGACAAGTCCAGTATTTCCCCCCCCTCAAATTAAACTCAGCCCTCTCTAGAAGCACACACTATCATTCTAAAATTTCCATGGAAACCCGCAGTATTTATCCTGAACACTCGACTATTTGATGGAATTTGAACACCAAATTGTCTGTCCTGTGGTGGCAGCTACTTTGACCTTCCAGCAGGTGTTCTCTCCACTGGGTCTGTGGGTTCTTTTTAAAGTATACATAATTCAAGGTGTAGCCAAAAATTTGAGGCTGAATTATCAGTAGGCTGGTGGTTCTCAAACTATGGGTTTCAACCCCTTTGAGTCACGTATCAGATATCCTGCATACCAGATGTTTACATTACAATTCATAACTAGTAAAATTACAGTTAGGAAGTAGCAACAAAATAATTTTACGGTTTGGAGGCCACCATAACCTGAGGAACTTTGTTAAAGGGTCAGAGCATTAGGAAGGTTGAGAACCACCAGTGTAGACTTTGGTCTTCCTTAACAGTGACCCTGTTCTTCCCAGGATGCTCTCCCACACATGTACCACTCTAATAGTGTCAGATTGCTCTTCAAGCCCATGAGCGAGCCTCTGCTTAAGTTCTAGTCACTCTTTCCTGTATCAATTGTAAGGCGGCCCCATGTCCTGTTTCATTTCTGTTGCTGTGATAAAAGACCCTGACCAAAGGTTCAGCTAAGTTATAGTTCCTCATTGTGGGGAATCAAGGCGGGGATAGTCAGTCACATCATACCATAGTCAGGAGCACAGAGAAGTGAATGCACAATGCATGCTTGTTTGTGCTGTACTCAGTGTCTCCACTCATACAGTTCCCCCACCATCACACCACCCTCCTCCTGTCAGGGGTGCACCCTCAAGTGGGCTATATCTTCGCACATCAGTTGCGACAGCCTCCCGTCGACATGTCCACCCAATGGAGATAGCTACTCTCTGGGATTCTTCCCAGGTGACATAGGCTGAGTCACCCATAGGAAGGAACATAAATACAGTCCACCGCGTTCGTTTCTTCCTCAGGCTGAGTCCTTTCCTCCTCCCGTGTGTTTTGTTTACCTTTACAGGGTTCTTACACACCTGCATGCATAAATTACATATTTGGTGCTGTGGATGGAGCGCAGGGTCTCACATGTGATGCCTCATGTGCGACCATTGAGCTCTACATGGACTTCAGCCTTGCTGCTTGTGTTCTGTACAGAATTTACAGTTGTCATCGAAGATGGGCTTTGTGTGTTAAATGCCTAGTAGTACAGTACGTGTTAAAGTATAATAAGCTCTTACTTGTGCTGTATATCAGGAGCTGTAACAAAAACTGGAACAGTTTCTGACGGACAGTAGGTGCTCGGTCTGTACTGTGTAATTTATGGAACTGAGTTTAGAGTTTTAGATAAAGTTCCATGTAGGGGACTATTTTCTAGTTGTAGAAATGATATTTTATTTGAGTGTTACCTGTACTTTGTGGGACAGTGAGTGTGGGGGAAGGGGAGTGGGAGAAAACCTGCGGTGCTCTGAGCGGGTGGGTAGACATGGAAGGACTGCAGCATGCTTTCCACGCCACCCCTGGTAGGTGTCTGGCTGTAAGAAGCCATGTACCCCAGCTCAGCAGGTGGTGGACAGGGGGCAGTCCTAGATACCAGGTTCTTAGCCTCAGGCATCCCAGACACCACTGGACACCGCGGAAGAGCTGAGAACAGAATGAGGGCCCCAGAGTGGTTCATTAGCCCTGGGGCTGAGGGGAAGAGAGGGCAGGGGGAGAGGGGAGCACTGGGTGGTTCCCATATGGAGAGTCCTTGGTTCAATCCGTGGCTGGAGAGCAAGAAGGCCTTCCAGCAGGAGGTTAGACACCCCTTGCTCTTTAGGGGAAAGCCTAAGCTTTGTTCAAGCACAGCGGGCCTTGATGAGCAGACACAGTCTATGGTTTTAAAGCTTTATTGTAGAAAGGCAGGGAGAACGAGAGAAGGTAGAAAGAGAGAGAGAGGCTGGCCAGGGCCACATTGGGGGGGGGGAGAAGGAGGTCTATAGAGATGAGCATAAGAAAGGTTAGAGCTTAGAGCTTAAAGAGAACGAGGAGGGGCCAGGTAGCCCCTCTTATAGTGGGCTGGGCTATCTTACTGTTGCCAGGTAACTCTGGGGCAGAGCATATCTGGCTATAGTCAGGTAAGTGTGCGGGTAGAGTCTAGCCAGAAGGCCAGAAGCTTGGGACGTTGTCTGCGTGACTGATAGTCACACACCTCTCCTGTGGGGACTGTCGGGGCAGTAACTTCGACAGGAGCCAGGGGTCCAGGAGACATGATTGAACACCTTCCGCCCTGTGTAGGTGGAAATCACCACCCATTGGGTCCTCTCTGGAGATCAGACTGTGCACAGTCCACTGCCCCACAGTACTTGATATTGGGAATCTAACTGATTTTATTGCTATATTTTAATGAAATTCAAGGTGATTTTTACATTTTAAG
Seq C2 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570:ENSMUST00000192001:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.5=16.7)
A:
NA
C2:
PF0030726=CH=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types