MmuINT0028500 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138194319-138201033:-
Coord C1 exon
chr1:138200872-138201033
Coord A exon
chr1:138194403-138200871
Coord C2 exon
chr1:138194319-138194402
Length
6469 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GGTGATTTTTACATTTTAAGGTA
3' ss Score
6.92
Exon sequences
Seq C1 exon
AGTGCACATTTGGCTATGATTGATACTCTAATGATGGCTTACACTGTAGAGATGATCAGCATAGAAAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATTGAGGATGCTGTCATGTACTGGATGAATAAG
Seq A exon
GTAGGCATGTACTTGATTGGATATGGTTCTAAGAACAGAAAACTGAAATCCTTGGTTGCACATTGTTCCTGTCTGGCTCTTTGTCTTAAATCAAAGTATAAGCTAAAGTTGTGCGATTTACTTGAAATATTTTACTTTTAAAAATATAAAAGCTGAACACGGTGGTGGCTCAGATCTGTACCCTCATCGCCTGTGAGGCTGAAGTGGGAGAGTCATTGAGTTCAAGGCCGGATTGGGCCGTACTGAGACCTGGTCTTAAATGAAAGTGTTGCAATGATAAAGCAGTTCTATATATCTACGAGTATCTGTAGTTTTACTTATTCTTAATAATGGCTACTCAGGGCTAATCAAGCTTGTATCAGATTATTACAAAACTCAGGGCACTGCACTCACAATAGGCCACATAGTGAGCAGGAACTACTCTTGGCTGGCATAATTCTCACACATTTCGGATTGGGAGAGTCTTAGATTTGTTTAACCAAATTAGACAAAATCATATTGATCGTGGATTCATTTTCTTGGAGATTTTTATGGTCTGTGCTTTGAACTGGTTACGTTCTTAATTTATTGCTCTCCTTGTTTTTTGAGTATTTAATTCTTCTTGACCCACATCCATGCATTCTGTTTTGAGGTAAGGTCTCACTGTGTGCACCTAACTGACCTGAAGTTTGTAGAGATCCTCTTGCCCCTGTCTCCCAGGTGCTGGGATTACAGGCTTGTGCCACCAGATGCAGGTGGCTCTACTTTCATTCAGTTGTCATTGCAGAGAAAATTAAACTACATCTGTGGACAGGCACTGAACAAATGTGAAATCACATCTTGAGATGTCTGGGCTTCCTTTGCTTGCATGAGCTTGTCATAGGCTAGACTGGGCTGGAGAGGTAGATGGCTTAGGACGTACAACACTTGCTGCATAAACATCAATCCACAGCTCAGATCTTCTGAAGCTGCAAAGAACTGGCAGCTTAGTTGTAGTCTCAATGCTTGGAAGCAGTGACGGGTCCTGTGAGGTCCTGAGTACTGTGGCCGTATCACACCCAGACGGCAGCATTTCACAGCGGTCTTGCCCTCTTCCAGCTCTTGTTTCTGTCCCACTTTCTGAGATGTTCCCTGAACCTTTTGGGGCAGGGAGTTAAAGAGATGTTCCATTTAGGGATGAACACACAACAATCACTTATTAACTCCAGTCTCTGCTTCAATGCTGCCCACACAGAAAGGAGCATCTCTGACCAAGGTGGAAATCAGCATAAACCTGTGAGAATAAACCTAAGTATTTAAAAGGCAGTTTGACAGGTGACCTGCCAGGCAGGTATGCCCACGGGTGCAATAGTGGCATGGCAGTCATGGGGCTGACAGAACCTCTCATGGATCGGATTTGATGCCTACTCATAGGAGGAGGGAATTCATGCCTGTAATGTAAACTTTGGCCAGTGCCTGTGGCTGGGGTGGCCGTATGCCTAAGTGGAAGCACTACTGCCTCAGTAAATGCTCCTGGAGGAGGAGAAAATTAACTCCAGCACCACAGGGAGCCCACCCATGGCGTGCACATGGCCAATGATATTGAACACCTTCAAAAATGTCTATAACCATTTATACTTCTTCTTTTGAGAACTCTGTAGTTCCATAGCCCCCTCTCTCAAGCCCCGCTGGTAATGTGGACAGCTGTTGGATTTCCTCAAAAGCTTTTTCGGAACCTGTGGAGATGACCATGTAATTCAGTCCTTGAGTCCATTTATGTAATTCATAACATTTATTAATTTACCTATATTGATCCATCTACGTATCTCTGGAATAAAGCCATCTTGATCATAGTTATGATCTTTTTTAATGTTCTTGAGCTGAGTTTGCAAATATTTTGTTGAGAATTTTTGTAACTATATTCATCAGGAGTTTGGTTTGTAATTTTCTTTTCTGTTGTTGTATCTGTTGTCTGTTTTGAATGTCAGAGTAATATTAGCTTTGTAAAAAGAGTTTAGCCGTGTTTCTTCCTTTTCTGTTTTATGGAGTAGTTTGAGAAGTATTAAGTTTGCTTCTTTTCTGAGACTCTGATAAGTATCAACAGTGAATCCATCTGGGCCTGGACTATATATATATTTTTTAATCTGAGATATTTTTCACTGCTGCTTCAGCCTCACCACTGTTAGCTCTTTTATAATTGTTTATCTCATTCTGATTTGATTTTGGTAGGTCATGTGCACCTAGAAATTCATCCATTTATTTTAGATTTCAGTTTAATGAGAACATGGTTTTAGATAAGACCTAAGGGTTTTCTGAATTCCATTGGCATCTGTTACAATGTCTCCCTTTTCATCTCTAGTTTTATTAATTTGTGTCTTCTCTTCCTCTTGGTTAGTTTGGCTGAGTTTGTCTTGTTTATCCTTCCAATGACCAACTCTGCGCTTCCTTGATCTTTGTTCTTTTTGTTTGGTGTTTTCATTTCTTTCCTCCTGCGCTGATATTACTGGTATCTGCCCAAATACTGAGTTAGCATGTGGCTTGTCTTTCTTTTTCCAGAGATTTAAGGAATATCATTAAGACATTTATTTGTGATCTCTCTGACTTGGAGACATAAATCACCCCCCCCACTCCCCCCCCCCCCCCACCGACTGCGGTCACTGCTTTCTGTAGATTTGGGTATGTTTAATTCATTGTCATTTGGTTCTAGGCTTTTTTTCCCCTTGGTTTCTTTTAGGTCTCCTTCCTCAGTCAGTTCTGTTTGGCTTAATCTCTCCATGAGCTCTAGGGGCTGTAGGGCTCATAGCCTTAGTACATTGTGATAAGGTAGAATACAAGAAATTATTTCAGTTTTCAGATATTTGTTGATTTGTTCTCTGTCCTGATGTATGATGCATTTTAAAAGAAAATCCCATGGACTGCTAGAAAAATATATATACTTTGCCACGTATGCATGGAATATTCTGAATATACATCTCAAATCCATGTGATCTGTGGAACATCATTCAGATGTTTCTTTTTGCCAAGATAACCTGTCTGTTGGTGAAAGTAGGTACTGAAGTCAACCACTGCTGTGCTGAGTTAATTTGTGGCTTTTCATTCATCTACTAATATTTGTTTTATGAAATTGCATGCACCTATGTAACTTCCTCTTGTTTCTTTAACCAGTTTGAAGTGACCCCCCCTCAAAAAAAGTTTTGGTTTGAATTCTGTTTTGTCAAAATCAGCAGCACCTGCTTGTTCCTTGGGTCTGTTGGCTTGGAATGCCCTTTTCCATCCTATCACTCCTAAGGCAGTGATCCTCAAAGGGTTGAGACCCCTTTGGTGGGCGTGTATCTAATAGGTATTTACATTACTATTTATAGCAGAAGCAAAATTACAGTTATAAGGTAGCAACAACATAATTTTATGGTTGGGGGGATCACCACAACGTGAAGAACTGTTTTAAAGTGTCATTAGGAAGGCTGAGAACTGATGCTCTAAAGTAATGCCTACTTTATCATGAGTTAGTGGTGTTGGTTTGCTTTGCTTTGCTTTGGTTTGGGTTTTTTTTCGACACAGGATTTCTCTGTGTCTCCCTGGCTGTCCTAGAACTCCTTCTGTAAATCAGACTGTTCTTGAGCACTGAGATCTACTGCCTGGGGCTCCTGGGTGCTGAGATCAAAGGCAAACGCCACCACTGCCCTGTGAGGCGTGTTTCTTGGAGGTAACAAGTACATGGCTTCTGCTGTTTGGTACACTGTGGAAGTTATTTGTCTTTCGATTGTGAAGTTGAGACTTAATAGTCAGAGTTATTATTGTAAAATTGTATATTGATTTCTGCTATTAGTCTTTTTACTATGGAAATTTTTTATCTTCACTTCAGTTGTGACAAGTAGCTTTGCTGGCACAGTGCTCTGGACTGGCTATAGTAGTTCTCCTTCAGAACTTGAAATACATCACTCCAAACCCCGCTGAACTTCCTGTAGACATTACTAATTGATTAACTGTCTCTTGTCACTCTCTCATCTCCATTCATACCCTGAAATTGTTTCTTTTGGTCAGTTAAAATCTCCATGCTGACAAGTCCAGTATTTCCCCCCCCTCAAATTAAACTCAGCCCTCTCTAGAAGCACACACTATCATTCTAAAATTTCCATGGAAACCCGCAGTATTTATCCTGAACACTCGACTATTTGATGGAATTTGAACACCAAATTGTCTGTCCTGTGGTGGCAGCTACTTTGACCTTCCAGCAGGTGTTCTCTCCACTGGGTCTGTGGGTTCTTTTTAAAGTATACATAATTCAAGGTGTAGCCAAAAATTTGAGGCTGAATTATCAGTAGGCTGGTGGTTCTCAAACTATGGGTTTCAACCCCTTTGAGTCACGTATCAGATATCCTGCATACCAGATGTTTACATTACAATTCATAACTAGTAAAATTACAGTTAGGAAGTAGCAACAAAATAATTTTACGGTTTGGAGGCCACCATAACCTGAGGAACTTTGTTAAAGGGTCAGAGCATTAGGAAGGTTGAGAACCACCAGTGTAGACTTTGGTCTTCCTTAACAGTGACCCTGTTCTTCCCAGGATGCTCTCCCACACATGTACCACTCTAATAGTGTCAGATTGCTCTTCAAGCCCATGAGCGAGCCTCTGCTTAAGTTCTAGTCACTCTTTCCTGTATCAATTGTAAGGCGGCCCCATGTCCTGTTTCATTTCTGTTGCTGTGATAAAAGACCCTGACCAAAGGTTCAGCTAAGTTATAGTTCCTCATTGTGGGGAATCAAGGCGGGGATAGTCAGTCACATCATACCATAGTCAGGAGCACAGAGAAGTGAATGCACAATGCATGCTTGTTTGTGCTGTACTCAGTGTCTCCACTCATACAGTTCCCCCACCATCACACCACCCTCCTCCTGTCAGGGGTGCACCCTCAAGTGGGCTATATCTTCGCACATCAGTTGCGACAGCCTCCCGTCGACATGTCCACCCAATGGAGATAGCTACTCTCTGGGATTCTTCCCAGGTGACATAGGCTGAGTCACCCATAGGAAGGAACATAAATACAGTCCACCGCGTTCGTTTCTTCCTCAGGCTGAGTCCTTTCCTCCTCCCGTGTGTTTTGTTTACCTTTACAGGGTTCTTACACACCTGCATGCATAAATTACATATTTGGTGCTGTGGATGGAGCGCAGGGTCTCACATGTGATGCCTCATGTGCGACCATTGAGCTCTACATGGACTTCAGCCTTGCTGCTTGTGTTCTGTACAGAATTTACAGTTGTCATCGAAGATGGGCTTTGTGTGTTAAATGCCTAGTAGTACAGTACGTGTTAAAGTATAATAAGCTCTTACTTGTGCTGTATATCAGGAGCTGTAACAAAAACTGGAACAGTTTCTGACGGACAGTAGGTGCTCGGTCTGTACTGTGTAATTTATGGAACTGAGTTTAGAGTTTTAGATAAAGTTCCATGTAGGGGACTATTTTCTAGTTGTAGAAATGATATTTTATTTGAGTGTTACCTGTACTTTGTGGGACAGTGAGTGTGGGGGAAGGGGAGTGGGAGAAAACCTGCGGTGCTCTGAGCGGGTGGGTAGACATGGAAGGACTGCAGCATGCTTTCCACGCCACCCCTGGTAGGTGTCTGGCTGTAAGAAGCCATGTACCCCAGCTCAGCAGGTGGTGGACAGGGGGCAGTCCTAGATACCAGGTTCTTAGCCTCAGGCATCCCAGACACCACTGGACACCGCGGAAGAGCTGAGAACAGAATGAGGGCCCCAGAGTGGTTCATTAGCCCTGGGGCTGAGGGGAAGAGAGGGCAGGGGGAGAGGGGAGCACTGGGTGGTTCCCATATGGAGAGTCCTTGGTTCAATCCGTGGCTGGAGAGCAAGAAGGCCTTCCAGCAGGAGGTTAGACACCCCTTGCTCTTTAGGGGAAAGCCTAAGCTTTGTTCAAGCACAGCGGGCCTTGATGAGCAGACACAGTCTATGGTTTTAAAGCTTTATTGTAGAAAGGCAGGGAGAACGAGAGAAGGTAGAAAGAGAGAGAGAGGCTGGCCAGGGCCACATTGGGGGGGGGGAGAAGGAGGTCTATAGAGATGAGCATAAGAAAGGTTAGAGCTTAGAGCTTAAAGAGAACGAGGAGGGGCCAGGTAGCCCCTCTTATAGTGGGCTGGGCTATCTTACTGTTGCCAGGTAACTCTGGGGCAGAGCATATCTGGCTATAGTCAGGTAAGTGTGCGGGTAGAGTCTAGCCAGAAGGCCAGAAGCTTGGGACGTTGTCTGCGTGACTGATAGTCACACACCTCTCCTGTGGGGACTGTCGGGGCAGTAACTTCGACAGGAGCCAGGGGTCCAGGAGACATGATTGAACACCTTCCGCCCTGTGTAGGTGGAAATCACCACCCATTGGGTCCTCTCTGGAGATCAGACTGTGCACAGTCCACTGCCCCACAGTACTTGATATTGGGAATCTAACTGATTTTATTGCTATATTTTAATGAAATTCAAGGTGATTTTTACATTTTAAG
Seq C2 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.664
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.5=16.7)
A:
NA
C2:
PF0030726=CH=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: