DreINT0041158 @ danRer10
Intron Retention
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26324210-26326655:-
Coord C1 exon
chr22:26326537-26326655
Coord A exon
chr22:26324344-26326536
Coord C2 exon
chr22:26324210-26324343
Length
2193 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
GTCTGTACCTTCTCCACCAGTTC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTGACTGTTGGCTGCTGGCTGCTATTGCCTCCCTGACGCAGAATGAAGATGTTTTGGCAAGAGTTGTGCCCAATGGACAGGAGTTTGATGGCACTTATGCAGGAATCTTCCATTTCCAG
Seq A exon
GTATCTGCAAGTACTTGAGTCACTTCCGATGAATTACAAAATAAATTCAGATAAAAATAAAAGATAAAATAAAACTATTATTTTTGGGAAGGTGTCCGGTGTTTATTGCATGTAATTGCACTATTGTGCAAAAATATATTTTAAAAAGTAATAAATTATAATAATATAATATTGTATTATCTATCTATCTATGTTAGCATTGCTAACATGTTTTAGGACAGTGTTTCTCAACCACGTTCCTGGAGGTTCGCCAGCACTGCATGTTTTGGTTGTCTCCTTTGTCTGTCACACCCATTACAGGTCTTTCAGTCTCTGCTAATGAGCTGATTATCTGAATCAGGTATGTTAGGTTAAGGAGACATGGAAAATGTGCAGAGCTGGTGGTCCTTCAGGAGTGTGGTTGAGAAACACAGTTTTAGGACATTGCTAGCATGTTAGTAGCATGATTAGCAGATTGTTATTAACATGTCTGAACATGTTGCTAGCATTCATTCATTCATTTTCTTGTCAGCTCAGTCCCTTTATTAATCCGTGGTCACCACAGCGGAATGAATCGCCGCTAGCATCTATTAGTAAATTGCTAACATTAGTAACTATTTTTAGATGATTTTGCTAACATCTCTTAATATGTTGGTAGCGTACTTAATAAGAATTAAATCTTTTAGCTTTTTTAGAGATGTTTTTTTTAACACAAGCTCATTGTGAATACGTACCGCCATATACATTTCTGGAGAGTGCAAACTATGTAGCCAGAGGTATGTATGGCTGCATTTTGTCTTTAAAACGAACGCTATGGGGTGGTATGACACCGCCGACAGCTTCTCTTTCTTTTTGCGCTACCAGCTGACCGCTTACCCCCGTGTGAATGGCTTTTCCGCTGTTAACAGTTTGCCAAGTGACTTACCACGTACGTTGGCGAACTTAAGATGCACTGAGGAGTTGACCGCAACTGTGGGGTTTAGGTCTAATCAAGAATGGTTCCAGAAAGTAGGTAAAACAAAAACAAAAGGCAATAAATAAAATAAACAAGTAAATAACGGTGAAAACGTAAAAAGATAAAAAAAAATGGTAAAAATCAGGGGGCTTTTCTTTTTCTGGATTGCATTTGAAAACACTGTCGGTTGGGTTTCGGGAACAGGGTGGAAGTCAATTGAAAAAGCTATCGTTGTGTTTAGGAAAGGGGCTGGTTAGGGGGATCGTTAGTCTACAGCGGCCTCTGGTGGATTTACGTGAGAACAGCAGGTATGAATGGCACTCGGGAGAGAAATTTGAGATCTAAAAAAGTGTACACAGTGGCCTTTGGTAGATTCATAAAGACAAAAACTGCTATAAAACGTAGCTCCTGGGATGTATTTCACGCTCTCCAGAAATGTATAGAGGGGCGCGGATCCATAATGAGCATGGGTTGTTTTTTTTTTTTGTTTTTTTTGCAGATTTTTTTTTTTTTTTTTTTTTACATGTTAAGGGTTAGAAGTCAGAATTATTAGCCCCCTGTTTATTTTTTTCCCCTAAATTTCTGTTTAATAGAGAGAAGATTTTTTTCAAAACATTTCTAAGCATAACAGTTTTAATAACTCATTTCTAATAACTGATTTATTTTATCTTTGCAATGATGATAGTAAATAATTTTTGACTAGACAATTTTCAAGGCACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTACGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTCATTGTATAACGATGGTTTGTTCTGTAGATCGAAAAATGGGAAATATTTAAAAAAAGAAAAAGAAATTAAAGGGGGGCTAATAATTCTGACTTCAACTGTATATATTAAAACCATGTTTTATTCCACACATACAATTTTCCATTTTTACTTGAAAATGCTGTCATGTACACACTCCATAACATAATTCTTCATAAACATACAAATTATCAGATATTATATGTAAAGGTAGTAAAAAAATTGTAAAAAGGAAAAGCTAATATATATATATATATATCTCAGAATCTTAATAATGCACAAAGTGTAAACAACAATGTGGGATTACAATACTAAGTGTCCAAAAAGGCACATTTTTTTGAGGCTTGTATCAAACACATTGTTTTTATGTGGGCATTTTTTTGTTCTTTGACACTCATTTTGAGATTGAACAGATAAATGTGAGTCTGTACCTTCTCCACCAG
Seq C2 exon
TTCTGGCAGTTTGGCGAGTGGGTGGATGTGGTCATTGACGACCGGCTGCCGGTGAAAGATGGCGAGCTGTTGTTTGTTCACTCCGCTGAGAAAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592:ENSDART00000077958:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.1=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]