DreINT0042120 @ danRer10
Intron Retention
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32668038-32668304:-
Coord C1 exon
chr5:32668228-32668304
Coord A exon
chr5:32668125-32668227
Coord C2 exon
chr5:32668038-32668124
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTCATTCACTTCTGAATAGGGA
3' ss Score
6.7
Exon sequences
Seq C1 exon
ATGTTGATCTTAATGACCCTACTACTAAGGAAGAACCATATGACTACAGATTTGTGAAATGGCTCATTAAAGAGAAG
Seq A exon
GTAAGTGGTTGGGTTCTAAAGTCCACTTGTAACATCTATGAGAAAAACATTTTGTCTAATAAATAATGATAAACAAATATTATTGTCATTCACTTCTGAATAG
Seq C2 exon
GGACTGGCCACCATCCCGGTATCTGCTTTCTACAGTCCAGAACACAGAGACCAATTCCAAAAATACATCAGATTCTGCTTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645:ENSDART00000004797:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGATCTTAATGACCCTACTACT
R:
AGCAGAATCTGATGTATTTTTGGAA
Band lengths:
155-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]