HsaINT0028662 @ hg38
Intron Retention
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128833740-128835402:-
Coord C1 exon
chr9:128835323-128835402
Coord A exon
chr9:128833827-128835322
Coord C2 exon
chr9:128833740-128833826
Length
1496 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ATGTCCTTCCTCCTCCCCAGGGC
3' ss Score
11.48
Exon sequences
Seq C1 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
Seq A exon
GTGGGCTGGGCCTCTGCCAGGCAGCCATGTATGGTTTCACAGGTTGTGTGCTGCTCAAGGGTGCCCAGGCAAGAGGCTCCTGGGCTAGATCTTAGTCCAGCCTCTGCCGTCAACCTTGGGGCAGGGTTGTATCCACTTCAGAGAATGAGGAGGCTGTTTCTTTTTTTCTTTCTTTTTTTTTTTTGGTTGAGATGGAGTCTCACTCTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCTCTGCCCCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCTACTTTTTTTTGCCCGGCTAATTTTTTTTGTATTTTTGGTAGAGACGGGGTTTCACCATGTTAGCCAGGTTGGTCTTGATCTCCTGACCTTGTAATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCTGGCCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCTAGGTGGGAGTGCAGTGGCGCAATCTCAGCACACTGCAACCTCCACCTCCAGGGTTCAAGCGATTCTCCTCCCTTAGCCTCCTGAGTAGTTGGGTAACTGGGATTACAGGCATGTACAACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTAGTCTCCAACTCCTGACCTCAGATGATCCACTCCCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGAGGAACCTGTTTCTAACTTGCACAGAGATGCTGTGTGGGCTGGCAGGATTTCCTGCCTCTTTGGATCTCCATCTTCCCATCTGTACAGTGAGGAGTTGGCCCATTAACTCTTGAGTTCATCCAGGTTTGATCTGTGACTCTAAGGCTTTGTTCTTCTCTGGCTCTGCCCTGACCTGCTCCATGATCCTCCCTCTGTCAGCCTCCCTCTGCCCTCTATACCCAGGGAGGGACTTGGAATGATGTTCTGGGATTCTTTTCTTCTGACTTTGTGTTTGTTTTTGTTTTGGATGGATTTTCTCTCTTTCGCCCAGGCTGCGGTGAAGTGGCGCAATCTGGCTCACTGCAACCTCCACCCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCCAATTTTTGTATTTTTGGTAGAGACGGGGTTTAGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGTCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCTGGCCTTGTTCCTCTGACTTTGATGCAGCTCTAGGTGCTGGATTGGAGCTAACTCTCCTTCCCCGCCTGGTCGTGGGAACCTCTCTGTCCCCTCCGGAGCCAAGGCCTGCTGGGCCACGAGGCCGTGTTGAGACATGTCCTTCCTCCTCCCCAG
Seq C2 exon
GGCTTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097:ENST00000302586:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PD(7.0=88.9)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development