HsaINT0028662 @ hg19
Intron Retention
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131596019-131597681:-
Coord C1 exon
chr9:131597602-131597681
Coord A exon
chr9:131596106-131597601
Coord C2 exon
chr9:131596019-131596105
Length
1496 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ATGTCCTTCCTCCTCCCCAGGGC
3' ss Score
11.48
Exon sequences
Seq C1 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
Seq A exon
GTGGGCTGGGCCTCTGCCAGGCAGCCATGTATGGTTTCACAGGTTGTGTGCTGCTCAAGGGTGCCCAGGCAAGAGGCTCCTGGGCTAGATCTTAGTCCAGCCTCTGCCGTCAACCTTGGGGCAGGGTTGTATCCACTTCAGAGAATGAGGAGGCTGTTTCTTTTTTTCTTTCTTTTTTTTTTTTGGTTGAGATGGAGTCTCACTCTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCTCTGCCCCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCTACTTTTTTTTGCCCGGCTAATTTTTTTTGTATTTTTGGTAGAGACGGGGTTTCACCATGTTAGCCAGGTTGGTCTTGATCTCCTGACCTTGTAATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCTGGCCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCTAGGTGGGAGTGCAGTGGCGCAATCTCAGCACACTGCAACCTCCACCTCCAGGGTTCAAGCGATTCTCCTCCCTTAGCCTCCTGAGTAGTTGGGTAACTGGGATTACAGGCATGTACAACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTAGTCTCCAACTCCTGACCTCAGATGATCCACTCCCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGAGGAACCTGTTTCTAACTTGCACAGAGATGCTGTGTGGGCTGGCAGGATTTCCTGCCTCTTTGGATCTCCATCTTCCCATCTGTACAGTGAGGAGTTGGCCCATTAACTCTTGAGTTCATCCAGGTTTGATCTGTGACTCTAAGGCTTTGTTCTTCTCTGGCTCTGCCCTGACCTGCTCCATGATCCTCCCTCTGTCAGCCTCCCTCTGCCCTCTATACCCAGGGAGGGACTTGGAATGATGTTCTGGGATTCTTTTCTTCTGACTTTGTGTTTGTTTTTGTTTTGGATGGATTTTCTCTCTTTCGCCCAGGCTGCGGTGAAGTGGCGCAATCTGGCTCACTGCAACCTCCACCCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCCAATTTTTGTATTTTTGGTAGAGACGGGGTTTAGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGTCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCTGGCCTTGTTCCTCTGACTTTGATGCAGCTCTAGGTGCTGGATTGGAGCTAACTCTCCTTCCCCGCCTGGTCGTGGGAACCTCTCTGTCCCCTCCGGAGCCAAGGCCTGCTGGGCCACGAGGCCGTGTTGAGACATGTCCTTCCTCCTCCCCAG
Seq C2 exon
GGCTTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-CCBL1:NM_001122671:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PD(7.2=92.6)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)