MmuINT0029986 @ mm9
Intron Retention
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30041187-30041791:-
Coord C1 exon
chr2:30041712-30041791
Coord A exon
chr2:30041274-30041711
Coord C2 exon
chr2:30041187-30041273
Length
438 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCTTCCTTGTTTGTCCCCAGGGG
3' ss Score
12.1
Exon sequences
Seq C1 exon
AGAGCAGCATGCCCGACCTGCCTGGTGCTATGGATGAGCCCTATGATACACGCTTTGCCAAGTGGATGATCAAAAACAAG
Seq A exon
GTAGGCTGGGCTCCTGCCAGGGCCAGGAGATGTAGTTGCACGGGTCATATGCCTGGTCCAGTTGAGGGACGCCAGCCCAACCTTTTCCACGACTCCTGCTACAAGGCTGGTTCACTTGAATAAGGAAGCTATGCTGGCTCCGGGAGGCCCTGCCCCTCTCTGAGCCCAGCCTTCCCTCCTAGACACTGAGGACCTAGCCCATCTGCTGTGAACCCTGCTCAAACCTCTGAGGTTCAAACAGTTCTTCCCAGCTCTGCCCAGGCATGCTGCAGAGTCTGTTGTCTGCACCCTGGGAGGAGCCCAGGGTGATGCCACACAGTGGTCTCTCCTGACCAGCACAGAAGATGGAGGGGACACACCCAGCCTTCCTCTGTCCCTGAGCTGATGGCTTAGCTCTCAAGGCTATACACAGACGTGATCTTCCTTGTTTGTCCCCAG
Seq C2 exon
GGGCTGTCAGCCATCCCTGTCTCCACCTTCTATAGCCAGCCCCATCATAAGGACTTTGACCACTACATCCGATTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-Ccbl1:NM_172404:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(11.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: