GgaINT0125523 @ galGal3
Intron Retention
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5913651-5914150:-
Coord C1 exon
chr17:5914074-5914150
Coord A exon
chr17:5913738-5914073
Coord C2 exon
chr17:5913651-5913737
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTGCATCTTCCCCTCCCCAGGGA
3' ss Score
10.22
Exon sequences
Seq C1 exon
AATCTGAAGTCCCTGATGTCCCCAACTCCGATGAGCCCTATGACTCCAGATTTGCCAAGTGGATGGTCAAGAACAAG
Seq A exon
GTAAATTTATCTGCTCCTTTTTCACTGTGGTGACTGTGGGTGGGTTTGTGCCCTCACAGGGAGCCAGTAGCAGCAGCAATAGCATCAGTGGGCAATGTCCTCATCCAGGCTCGGTTTTAGGGTCACGGCCATGGTGCCAGGCAGGGCTGGGACTCTCCCATCCCACGTGTGTGTCCAGCAGCCCAGGGCTGGGGGACATTTGGGGTCTGTCAAGCTTCAACTCTGTCAGCCTGAGCGGAGCATCTCTGAGCCCATCTATGAGACTTGTGAACAACAGGTCACAGCTTTGCCCCTCGCCCATGGCGGTTACATAACTCTGCATCTTCCCCTCCCCAG
Seq C2 exon
GGACTGGCGGCCATCCCCCTCTCGGCGTTCTACTGTGGGGCCCACAAGGACAACTACAACACTTTCATCCGGTTCTGCTTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604:ENSGALT00000007326:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.4=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]