DreINT0042444 @ danRer10
Intron Retention
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48522190-48525404:+
Coord C1 exon
chr9:48522190-48522389
Coord A exon
chr9:48522390-48525230
Coord C2 exon
chr9:48525231-48525404
Length
2841 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ATCTGACTTCATCTTTACAGGGA
3' ss Score
8.24
Exon sequences
Seq C1 exon
CTGTGAACTCGGAGATGGAGAAAACCGGGGCAAATCTTCGTCAAGTGGTGGTCTTGTCTAAATCTGAATGGCAGCGGCTGCAGGACAGTGTGAACGGTATAAATCACCATAACAGAAGTGTGATGGCGGCGGCTGAACAGCGGGAGGCGCTGCACAAGCGCTCTAAAGACATCGTCAAAAACTGGTCCAACACCATTGCC
Seq A exon
GTGAGTTAATCCGTTGTAATTATTATAATATTTCTAAACTTCCCATTAAAGTATCCAATTTCCTTAAACAAGTATTATTGGCATGGAATCTAATATATAAACACAACTTTAGTCCCCATAGGTATTATATCTGGAATAATGATATTTGTTATAAAATTAAATCTATATTTTATTGCTTTAAGAACAATATTTGCTTAGTTTCTGAACTTTTTTAAAATAGTAGTCATTTACCTTCTTATTCTGAGTTCTTAAGTAAATACTGTATTCCGATAACCCCACATGAGTTTTCCATAGTCATGGATGCAATTCCTAGTGGAGCTATTGCCCTTTAAAAAAAAACTCTCTTGATTCTGTTGTCCCCTTTACTTCACTGATTAATGCTTGTGAAACAGTGATTGAAATTTTTTTTTCACGCTTAACACTTCTCTCAGAAATAAAAAGATTTGGCATCTTTTTCAGAATGAAATAACCTCTATTCCTCATGTCATATTTCACTGGAATAATTTATTTCATGACATTCCTTGGAACATTGTGTGGTTTTCACCTAACAAAATTTTAATTACAAATAAGGTTAAAGAGTTTTCCTTCAAATTGCTACATTAAGTTTATCCAGTGAATGTTTATAAATAAAAAAATGCTTCCCCTTTGTTCCTTTTGTGAAATAATAGATGAATCTGTCGATCATCTTTTTTGGAAATTTGCTCCATATTAAGATTTTTTGGAAGGAATTTGGTTATATATTGGTTATATATTTGGTGTCTCTCTTTTAGATAATTTTTCTTTGTCATACAAAGATGTTTTACTTGGTTTTTATCATGTTGATAAAGTAAAAGATCAATATTTTCTAATAAATCTATTTATTTTACCAGCAAAATTTTGTATACACAAATGCAAATTTTTGTCTGTAAAGCCCCTTTTTCTTATTTTTTGTAAAGATTAGAAATGTTATTTGAATACAATCTCGACCTACAGCAATGTTAAAGCTTTAAAATCAATAACACTATGTGAATCTTACAGTATTGTTTCTTTTCTATAATAGCCAGCAAACTGTATGTGACCTTTTATACATCACCGTGACCTTAAAGTGATACTTGTAATTCATAATTCATAATCTTTTGTTTCTCTTTTTATTTTGTTCGGTTTTCTGTTTTGTTTTTATAGAATTTATACACTTTCTGTATATTTTTGTATTTTTGTTGAACGTTCCAAAAAAATAAAAAGTATTTGATCCATTTCAATCCATTTATATTTCAATAGCGCTTTTTACAAAGTAGACTTTGTTGGAGCAGTATAACATAGATGCAAGGGTATAGAATTAGAATGGACAGAGGGGATGTGTCCCCACCAATATCAACCGATTTTCACCAATATCCCCACCAATAATTTAATCGCCTCTAAAAAATAATGCTTTGTTGAAATTTTCCAGTCAGGCAAGCTTACTGTGCAAGACTGTTCTATACATAAGCAGCTACATTTCAAAGAAAAGTGTAAGTCAAGTTTGTTACAAGTCCACCATAAAAGTAATCATGGATGTACAATTAATAAAAAAAAACTGTTTTGATTTTGGCCTTCACGACAATTATGAAGAAACAACAATCGAGATAAAATGGTTATTGTGTCATATGCCTCCCCTTTTTTTCTGGATTCATTCCTAATCAAAGTAAAATCATGTAAATGTACTTTTGCAGCATTGGGCATGCTCAATTTAATGTTGTTTTGATTATAATTGTATTTGATTTATATATTTATGTATTTTTTAACTGCAAAATAGAACATGAGCTGTTCTGTTTACACGCTGAGAGAAGGAACCAAGCTTGGACATACAAAGTCACATTTTAGCATAAGTTGCAAGCATAAGTGGATACTTGCAAAAATGTGTTCAAGTGGGGCAGTAAGGGATTATGCACAAATAAAAAAACATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAAAGATGGTTATTAAATGAAAAGTTAAAATGTGTAAATTAATAAATACAGGACTATTTTTGGCACTGTCGAACAATGTCTCTGACTTCACAATACATCACCACATACAAATACACAACACAGATACACAGAATGATTTCCATTTAACACTCTCACAGCACATGGGCACGAAATATAACTAGTCGGTTTTCTTTAACGCTCATGGTTGCCTGTAGCGTATACCTGAATGAAGTGGTTGAAACTCATTGTGAAGTGGATAAAAAACCTCCTCAACTGTTTTTAAAGCCTTTTGCTTTACAAGAGAAAATAAATGTTTCTCAAAGTATATTTATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGGTCGCCACAGCGGAATGAACCGGCAACTTATCCAGCATATGTTTTGCGCAGTGGATGGCCTTCCAGTGGCAACCCATCACCAGGAAATCTTAAATTATATTTTACACCTATTTTTATGTTATAAACTCAAATGATAAACTATGTAAATAACTTTTACATTTTAGAATATATTGCTTATCATTTTTATATATATTTTTTTATATAATTGTATTTTTATAATTGCTAAATGTTTTAGATTTTTATATTATTTATATATTTTTACATTCTTTGATTTTATCCATGTATTTATTAATTTACATACAACATACACCTTTAATATGTGTCTATGTTACGTAACATTTCATCCATATTTTTTTGTATTTTAGTTTTACAAAAGTTATTTGAAACATTTGACACTGATTTATTTAATATATTTCCAAAATCACATTTAATTTGATTTACTGTATACTAAAATGTATGTTTGACCCACATACCAACATCTGACTTCATCTTTACAG
Seq C2 exon
GGACAGCGACAAAAAAAGCTTGAGGCCAAGAAAATCCGTGAGGCGATCGAAGAAGAGGAGAGAAAACTAATTGACATAGAAGAAGCGAAATACCAGGCCCAAATGCGGAAGGAGGCCATCGAGAAGGCAAAAACCCAGATGTACTACCAGACCGACAGAGTGAAAGGCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928:ENSDART00000145972:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF096515=Cas_APE2256=PU(32.6=53.4),PF138681=Trichoplein=PU(3.7=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]