HsaINT0023595 @ hg38
Intron Retention
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169674867-169681233:-
Coord C1 exon
chr2:169681007-169681233
Coord A exon
chr2:169675041-169681006
Coord C2 exon
chr2:169674867-169675040
Length
5966 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTGTGTTTGTCTTTTTACAGGGG
3' ss Score
10.61
Exon sequences
Seq C1 exon
AAATAAGAAACTCTGAAGAAGATCAAGTTCTCTATCTGCCTCTTCTACCTAGCAAAGTAGATCTCCAGCAGGTCACCATAATTCCACACGATGAGTGGAAAAGGATTCAAGATAGCCTTGACAGGTTGACAAGAGAAGCAGCATGCCTCCGTGCAGAAAGAAAGGCAAAGAAAGAAATGCATTTGCGATCTCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
Seq A exon
GTAAGTATTAACCATCCAGGAGTACACATGCACTGAAGACTTACTCTTGTTTCTTAGTACTCTTATGCTTCTTTTTATAAATTTTTTTACATGTAAAATTTCATAAAAATGCATCGAAACATATTTTCAACAGTGTTATTTAGGTATAAGTGATATACAATGAATTGGACATATTTGAAATGTACAATCCTATAATTTTGACATATGTATAAACCCCAAAACCATCATTACTATTAGGATAATGAACATGTTCTTCACCCCAAAATTTCCTCATGACCTGTTTTGTTCCCTCTTATTTCTCCCTGCTCCTCTTCTGGATCCTTAGGTAACCACCGATCTGCTTCCTATTACAGATTTCATTCAACACAATTACTTTGAGATTCATTCATGTTGTGGGTATCAATTGTTAATTTTTATTGCTGAATCGTATTCCATTGTATGGATATACCACAGTTTGTTTATTTGGTCACTTTTTGATGGTTGACATCAATGAAACGTTGACATTTGAGCTGTTTCCCTTTTTGGCTATTACAAACAAAGCTGCTATGAACATTCACTTATAAGTCTATGTATGGACATATGCTTCCATTTCTCTTAGTAAATATCTTCGTGTAGAATAGCTGTCTTTTATGATAGGTGTATATTTAACTTTGTAAGAAACTTCCAAACTGTTATCCAAAGTAGTTGTAATTTTGCATTCCCAATAATAATCTTTGAGAGTTCTATTTCCTCTCCATCCTCAACAACACTTGGTATAGTTGGTCTTTTTAATTATAAACATTCTAATAGGTGTGCAATATCTCATTATAGTTTTAATTTGAATTTCTCTAAGTAAAAATGATGTTGAATATCTCTTCCTGAACTTATTTTCTATCAGTATATCTTCTTTGTTGATGTATCCATTCAAATATTTTTCCCATTTTAAAATTAGTTTTGTCATTGAGCTTAGATAATTTTTAAACTATATTCCAAATACAAATTCATTATTAGGTATTTGACTTGAAAATATTTTCTCCCACTCTATATCTTGACTTTTCATTTCCTTACTGTGTCTTTTGAAAAGCAAAAGTTTTTACTTTTAGTGAAGTATGGTTTATCAATTTTTCTTGTATATATCATTCTTTTAGTGGCTTATCCAAGAAATCTTTACCTAATCTAATGTCACAAAGATTTTCTCCTATGTTTTCTTTTAGAAGTTTTAAAATTTTAGATTTCACCAAATACTGCATGTTCTCACTTATAGGTGGGAGGTAAATGCTGAGTACACATGGACACAAAGAAGGTAACAGTAGACACTGGCACCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGTTCTGTCACCCAGGCTAGAGTGCAGTGGGGCAATCTCGGCTGACTGCAAGCTCCACCTCCAGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGCATCTGCAACCATGCCTGGCTAATTTTTTGTATTTTATTTTGTAGAGATGGGTTTTCACCATGTTAGCCAGGATGGTCTTGATATCCTGACCTCGTGATCCACCTGCCTCGGCTTCCAAAGTGCTGGGATTACAGGCCTGAGCCACTGCGCCCAGCCGACACTGGCACCTGCTTAAGGATGGAGGAGGGTGGGAGGAAGATGTCGACTGGATATTATGCTGATTACCTGGGTGACAAAATTATCTGCACACCAAATCCTTGTGACTTGCAATTTACCTGTGTAACAAACCTGCGCATGTAGCCTTTGAACCTAAAATAAAAGTTGGAAAGAAATACATATTTTTTGGTTTCCTGTATAGGTCTATGAACCATTTTAAATATGTGCTTATATGCAATGAGGTATTGATTTTTTTTGTTTTTGTGTATGAAGATCAATTGTTCTTGCATAATTTATTGAAAATACCATTCTTTATCCACTACATTGCCTTTGAACTTTTCTTGAAAATCCACTTGCGTATATATATTCAGGCGACATTTCTGCACTATCTATTCTGTTTTATTGCTCTATTTATCTGTCTTTACTCCAATAATACACTGTCTTGATGACTGTAGATTTAATAATAGGTCTTGAAATCATTTCTTTTTCAAAGTTGTTTTCACTATTCTAGGTCCTTTGCACATCCTTATGATTCTTTTAATTTTAATTTTTTATTTTATTTTTATTTTTTTTGAAATGGAGTCTCACTCTGTCGCCTAGTCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGAATACAGGCCCGCACCATCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTCATCATGTTGGCCAGGCTGGTCTCTAACTCCTGACTTCAAGTGATCTGCCAGCCTTGGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGACACTGTACCTGGCCATTATGAAATTTAGAATCTGCTTGTCAATTCATGCGAAAAAGCCAGCTGGAATTTTTATTGGGATTGTGTTGAATCTCTAGATCAATTTGGAGATAGTTACATTATGACAATATTGAATCTTCTGAACCATGAACATATTCTCTCTATTTGTTTAAGGCTTAATTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTATAATGGTAAGGTCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCTGTCTCCTGGAGTAGCTGAGATTACAGGCATGCGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTTTATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCTAAGTCTTAATTTCTGTCAGCAGTGTTTTATAGTTTTCAGTATATAGGTTTTATACATCTTTCGTTGGATTTATCCCTAAATATTTCATATTTTTAATATTATGGTAAATGGTATTTTTAAAAGTTTCAATCTGCTATTGTTAGCTTTAGAAATACAGTAAATTTTTCCTGTATTGATCTGGTATCCTGCAACATGGCTAATCTCACTTATTAGTTCTAGTCCCTTCTTGATAGATTCCATCAGATTTCCTACATAGACAATCATGGCATCAGAGAATAAAGACAGTTTTAATTCTTTTTTTTCCAATCTGGATGCCTGTTTCTTTTTCTTGACTTACTGCACTTGCTAGAAGCTCCAATATGATATTGAATAAATGTAGTGAAGGTAGATATTCTTGCCTTATTCCTGACTTTGGGGAAAAAGTACTCATTCTTTCACCTTTAAGTATGATGCTAAGTGTATGGTTTTTGTAGATGTCCCTAATCAAGTTGAAGTTGCCTTCTATATCGAAATTGTTGAGTGTTTTGGTTCTTTTAAAATCAGAAATGGATGTTAGATTTTTTAAAGTACTTTTTTTGATGTCTATTGAGATTATCACGAGGTTCTTATTTTCTAGTTTGTTAAAATTGTGAATTACACTGATTGATTTTTAAATATTCAACCAAGCTTGCATTCCTAAGATAAAACCCCATTGGTCTTAATGTATTATCCTTTTGATGGATTGAATTTGCTAAAATGTTATTAATTTTTGTATCTGTGTTCATGAGGGATATTGGTCCATAGTTTTCTTGAAATATCTTTATCTAGTTTGAGTATCAGAGTCGTGCTGTTTATTGTTATGACGCAGGGTTGCGCAGAAAGCCAGAGTACTCGAAACTGTGAAGAACCAAGGCAGCTTCTCGTCATTTGCCTCTGATTTGTCTGTCTTGCCTGCCTCTTCCTCTCTCTGGAACTGCATAGTGCTTTTGCTGTGCTCCTCTCTGTGCATCTGCTGGCCTCCCTCTGCCTGAAGGTTATAGTAGCCCAGTTTAGCTCCTTATGCATGAATGGGAAACTTCTTTGAAATGGGGAGGTGTCCCCTGACTCCTTTTATTATCTCGCCTGGGGAGAAATGCTGGGAAAAGGTAATCCCTCCCTCCACCCTACTTTCCTCCATTGTTTGAGGCACTGAGAGGCAGGGTTATTTTTGTTTTATGGTAGAATTATTAAAACTACAGATAGGCATAAACTCAGTCTGGAGAGTTCTCACTTGTTTTTTTTTCTTTTTAACATTGCCTGTTTCCTTACTTTGTTGCAGTATACATTATTTATCTTTGGGAAAGGACATAGAAAACTTATAGTACCTCGCTTTAGGAACAATGGTCATAATTTATTAATTCTTTCTTTTCTCAAAGAGGGAAGAATTATATGATGGACTAATATATGTAACATACGACATTCTGAAAAAAGCAAAACTATAGGGAGAGAAAACAGATCAGTGGTTGCCAGGGCCTACAGGTAGGGGGAGTGGTTGACTATAAGACATGATGGGATTTTTTGGGAGGATGGAACTATTTTGTAAGTGACTGTATGCATTTGTAAACTCTACACTATAAGGGCACATGTAAATTATAATATAGAAAACTTGATTTTAAAAACGTCCCTGGTACATAAAGGGATAGGGGATGGGGATATATCCTTTTTTTTTTTTTGTAACACAGAAGTAGCACATGTAACGCTTTAACTCTCCATTGGTATTAAAGATGAATAATAAATGATGATTCATCTTACCAGCAAGACTGTCTATAAACCCATAGTAGTAAAAACTATGATATAGACACGGAGAATGACAAAATAATAGGTCAGAAGAGAGAACCTAGAAACAAACCCATGTTATATATAGGAACTTGACATATAACAAAAATTTCATTGCAAATAGGAAAGGAAAGGGTGGGAATTCAACAACTGATACTGGGATAATTGGCATATGAAAGAGATTAAATTACATCTCAATAGTACAGAATGCAGAAAAATGGATTTCAGCCAGACGAAACACCTAAATTTAAATGGCAAAACACTAAAACTTTTAACATAAATAATAGAATATCTTCAGGATATCAGAGTAAACAAGGTTTTCTTAGGACATAGGAAATAGGACCAATAAGGAAAAGGAAGACCTCATATGACATGAGGAGTGAAGGCCTCAGAGTTATAGAAGAGCATATAAAATATACAACTGTTGGTTTTTTAAAGGAGCAAAAGGAGTGAGATATATATTTATTGTGTAACTGTGGAGAGGAACTTTGGAAGTAGACAAAAGAAACTAATAGTGGTTATCTTAGAATGAGAGGAGATTGCAGATGGGTTGGAAGGTGATATAGTTTGGATGTGTGTCTCCATTCAGATATCATATTGAAATGTAATTCCCAGTGTTGGAGGTGGGGCCTGCTGGGAGGTGAGTGGATCATGGGGGCAGATTTCTCATGAATGGTTTAGCACCATCCCCATTGGTACTGTCCTCGAAATAGTGACTGTGTTCTCGTGAGATGTGGTCATTTAAAAGTGTGTACCACCTCCTGCCTTCACTTTCTTGTTTCTGCTCTGGCCATGACATGCCTGCTCCCCCTTTGCCTTCCGCCACAATTGTAAGTTTCCTAAGGCCTCTCCAGAAGCTGAGCAGATGCCAGCATCATCCTTCCTGTACAGCCTACAGAACTGTGAGCTAATTAAATCTTTTTTCTTTATAAATTACCCAGTCTCTGGTATTTCTTTATAGAAATGTGAGAACAGATTAATACAAAAGGAGAAGTTCATATACCTCTATAATATTTTGGGATTTTGAACCATGTAAATGTGTTATCTACCTAAAAAGGTCGGTCTAAAAAATAAGCTCATAAGTGTAGCCTCATTTTATTTATTAATAAAATATTACAAATACAATAAAAACATAAAAGCTCAAATTATCATATTATTATGTTAAACTGTAGTAAAATTAAATTGAAAAATGAAAACAAAAAATTGTGTTTGTCTTTTTACAG
Seq C2 exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAGGCAGAAAGACAAATTCTTGATCTGGAAGAAGAAATATACAAACAAGGAAAAAGAAAAAAGGCCATTGAAAATGCAAAGCAATATCAATTTTACCAGACAGAAAGAGTGAAAAACTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479:ENST00000447353:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138681=Trichoplein=PU(2.7=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development