BtaINT0033016 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26667906-26671267:+
Coord C1 exon
chr2:26667906-26668132
Coord A exon
chr2:26668133-26671093
Coord C2 exon
chr2:26671094-26671267
Length
2961 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTGCTTTTATCTTTTTGTAGGGG
3' ss Score
9.49
Exon sequences
Seq C1 exon
AAATGAAGAACTGTGAAGAAGATCCAGTTCTCTATCCACCTCTTCTGCCTACCAAAGTAGATCTCCGGCAGGTCACCATAATTCCACACAATGAGTGGGAAAGGATTCGAGATAGCCTAGACAGTTTGACAAGAGAAGCAGCATGCCTTCGTGCAGAAAGAAAAGCAAAGAAAGAAATGCATTTACGATCCCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
Seq A exon
GTAAGTATTAACCATCTCGGAGTACACATGCACTGAAGACTTACTCTTCTTAGTACTCTTTTATAAATATTTTAAAGATGCAAAATAGCATTACAGTGCATTGAAACACATTTTCAACAGCTTTATTTAGGTATAAGTGGCATACAGTAAACTGGATGTATTTAAAGTGTACAATTTAAGATTGGATGTGCTTATTTACTCCTGAAACCATTATTATAATCAAGATAATGAACATATAATTGCCCCCCAGAAAGTTTTATTGTACCCCATTTTACTTCCTCTCATTCCTCCCCATGCTTCCTCCAGTGTCTCCAGGCAACCACTGATCTGCTGTCTATTATAAATTTAACTCACACTATTATTTGGAAATTCTTTCATGTTTTGTATCAATTATTAATTCATTTTATTGCTGAGCAGTATTCCATTGTATGGATATAACACAGTTTGTTATTATGCTCAGTTGTTGATGGATGAACATCAAGCAGATATTGACATTTGACCTGCAACAGAAAGTAAAGACAGTTTTATGAATTTTACTTCTTTTCCAATCTGGGTGTGTCTTTTAGTTCTTTCTTTCTCTTTCTTTTTGCCTTATTGTACAGGAATGGATGTTTGATTTTTAAAGTGCTTTTTTTTTTTTTTTGCTTGTCTCTGTTGATGTAATCATGAAGTTGTAATTCTTAATTTTGTTATATGGTGAATTGATCAGTATTCAAACATTGAAGCAAGATTGCATTCCTGGGATAAATGTCTGCTGGTTATATGTTATCTTTTTGATGGTTTCAGTTTGTTAAAATGTTAATTTTTGCATATGTATTGATGAGGGATATTGAACTGATGAGGGATATTGAACTGATTGAACTTCTTGAAATGATATTGGTTTTCTTGAAATGTCTTTGTCTGGTTTGGATATCAGGGTAATGCTGGTTATTGTTACGATGGAGGATTGTGCAGAAACACAGGTCTTGAAACTGAGGAGCCAAGGAGCTTCTTGAGGTATCCAGGCAGCTTCATCTGCCGTTGATTTGTCTGCCATTCCATCTTTTTCTAAAATGATATATCTCTTTGCTGTGCCGTTCTCTGTGCATCTGTAAGATTCTCTACCTAAGAGGTACAGTAACCTGCGTTTTAGTGCCATGTACATGAGTGGGAATCTACTTCAAAGTGGGGAGGTATCCTCTGACTCCTTTTATTATTTCACCTGGGGAGAAATGCTGGGAAAAGATATTCTCATCCCCCTACAACACTTGCCTGGATCATTGAGGAACTGAGAGGCAGGAATTTTTCCTGTTTTCTAGTAGAATTTTTAAAACTCTGTGCAAGCATAATATCTGCTTAGAGAGTTCTCACTTTTCCCTACCCCCCCCAACTTTGCATATTTCCTCACTATATTGCAAGGTACATTATCTATCTTTGGGAGGGGACACAGAAAGCTTGTCTTTTCTTGCTTTAGGAACAGTGTTCATAATTTATGAATTCTCTTTTTTCTAAAAGAGGGAAGAGTTACATCATGACTGATATCATATATGTAATATAATATGTGACATTCTGAAAAAGGCAAAACTTACAAGGAAAGAAAACAGATCAGTGATTCCCAGGGGGTACAGGTGGGGGGAATAGTTGACTCTAACAGGACATGAGGGAATTTTAGGGGAGGATGGAACTGTTCTATAAATGACTATGCATTTGTAAAACTGTATGTTAAAAGAGCGTATATAACATATACTGTAAAAAATTTGATTTTAGAAAAGCCCTTGGTCCATAAATAGATGGGGGTGTGAAATATACTCCCTGTTTTTTTTTTTTTCCTAGAAGTACCACACTACACCTAATACTTTACACTTTCATGGGTGTTAAAGAAGAAAAAAAATGTAGTGAGTGTAATAGAAACATAATAATAAAAACTGCAGTATAGGCACAGGGATTGGCAAAATGATTCATCAGTAGAGAGAGCCTAGAAGCAATCCTGTGTTATACATGGGAGCCTGCCATGTGCTAGAAATGTCATTGCAAATTAAATGGAAAAAGATGGAAATTCCATAACAGATACTGAAATAATTGGCATATGGAAAAAATGAAATTATATCCCTATGGCACAGAATATACAAAAATGAATTTCAGCTGGATTTAAGACCTAAATGTGGAAAATGGAACATTTAAAAATAAATCATAGGATAGCTTCAAGGTTTCAGGGTAGGTGAGATTTTCTTAAGATGTAGAAAGTATGACCCATAAAGGAGAAAATGACTTCATGGATATGAGACATTGACTACCTCCTCAGGGGTGTAGAAGAACATGTGAAATATGCTGTTGTTGATTTTTTAAAGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCCGCCTGCCAATGCAGGAGACACGGTTCCATCCCTGATCCAGGAGGATCCCTCGTACTGTGGAGCAATCGAGTCTGTGCTCCACGACTATTATTGAGCCTGTGCTCTAGAGCCCGGGAGCCACAACTACGTAAGCCCGCACGCCCTAGAGCCTGTGGTCCCCAGCAAGGGAAGCCACCGCAATGAGAAGCTCGCACACCACGAGAGAGGAGTCCTAGCTCACCGCAAAGAGCCCTTGCAGCAACAAAGACCAAGCACAGCCAGAAATAAATAAATAAATAAAGGGACAAAAGTAGCAATATTATTTATATAGAATGGAATTATGGAAGTAAGTGTGAGAAACTAAGGTAAGTGTTTATCTTAGAGATTCCAGGTACAAATGAGGATTGGAGGGAGAGTTCCATTATATACTTTTGTAATATTTTGGGTTTTGAACCATGTAAATGTATTACCTAAAAAATTCAATTAAAGATTAGCTCATAAGTATAACCTCTTATTTATTAATGGTATGTGCAAATACTCAGGGAAAGCTCTAATTATAATGTTAAATTTTGTAAGGTTAAATTACAAAATGAAAACAGACTACTGCTTTTATCTTTTTGTAG
Seq C2 exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAAGCAGAAAGACAAATTCTTGATATAGAAGAAGCAATATACAAACAAGGAGAAAGGAAAAAGGCCATTGAACTTGCAAAGCAATACCAATTTTACCAGACAGAACGAGTGAAAAACTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090:ENSBTAT00000046952:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138681=Trichoplein=PU(2.6=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]