BtaEX0007474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26666110-26671267:+
Coord C1 exon
chr2:26666110-26666250
Coord A exon
chr2:26667906-26668132
Coord C2 exon
chr2:26671094-26671267
Length
227 bp
Sequences
Splice sites
3' ss Seq
CATTTTTAAAAATTTATTAGAAA
3' ss Score
3.29
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTGGTTTGGCGAAAACTCTGCCGCCTGGAGGCCGTGGAGCTTTCGCTTCAAATCGCCTTTCCAAGCCTGAGAACGCCGCGGGCACCCTAGAGATGCTGGTGCGATTCGGAAGGCGCAGTGGACAGGCGAAGGAAAGCGCGG
Seq A exon
AAATGAAGAACTGTGAAGAAGATCCAGTTCTCTATCCACCTCTTCTGCCTACCAAAGTAGATCTCCGGCAGGTCACCATAATTCCACACAATGAGTGGGAAAGGATTCGAGATAGCCTAGACAGTTTGACAAGAGAAGCAGCATGCCTTCGTGCAGAAAGAAAAGCAAAGAAAGAAATGCATTTACGATCCCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
Seq C2 exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAAGCAGAAAGACAAATTCTTGATATAGAAGAAGCAATATACAAACAAGGAGAAAGGAAAAAGGCCATTGAACTTGCAAAGCAATACCAATTTTACCAGACAGAACGAGTGAAAAACTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.105 C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138681=Trichoplein=PU(2.6=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTTGGCGAAAACTCTGC
R:
TTTTCACTCGTTCTGTCTGGT
Band lengths:
307-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development