RnoEX6017319 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:56024399-56030744:-
Coord C1 exon
chr3:56030595-56030744
Coord A exon
chr3:56027773-56027999
Coord C2 exon
chr3:56024399-56024572
Length
227 bp
Sequences
Splice sites
3' ss Seq
CTATGTCTTTAATACATTAGGAA
3' ss Score
4.6
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTTGCTAAACAACCAAATGGTTTATCTACCATTCAGTCGCTGACTTCAGCTTGAAAATAGTCTCACAGGCTCTGGACTCACAGGGCTCAGCTTGTTAGAGATGCAGGTGCGCTATGGAAGGCGCTCCGGGAAGGCGAAGGAAAGGGCAG
Seq A exon
GAATGGAGAGCTATGAAAAAGAAGAGATTCCCTATCCACCTCTCCTACCTAGCACAGTAGATCTCCAGCAGGTCACCATCATTCCACATGCTGAGTGGGAAAGGATTCGGGATAGCCTCAACAAGTTGACAAGAGAAGCAGCGGTCCTTCGTGCAGAAAGAACAGCAAAGAAAAATATGCATATGAAATCCCAAGAATTGGTAAAACACTGGACTAACACATACGCA
Seq C2 exon
GGAATGAAAGAACAGAAACTTAGAGCCAAGCAGAAGCGTGATGAAGAGCTTGAGGCTGAAAGACAAATTCTTGATCTGGAGGAAGAAATATACAAACAAGGAGAAAGGAAGAAGGCCATCGAAAATGCAAAGCAGTATCAGTTTTACCAGACAGAGAGAGTGAAACGCTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954-'1-4,'1-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.336 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138681=Trichoplein=PU(2.7=15.5)
Main Skipping Isoform:
ENSRNOT00000089637fB2518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCATTCAGTCGCTGACT
R:
GCGTTTCACTCTCTCTGTCTGG
Band lengths:
293-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]