MmuEX0001716 @ mm10
Exon Skipping
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69781945-69789575:-
Coord C1 exon
chr2:69789415-69789575
Coord A exon
chr2:69787160-69787386
Coord C2 exon
chr2:69781945-69782118
Length
227 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCTTAATGCATTAGGAA
3' ss Score
5.8
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ACTTCCGGCGTGGTTGCTAAACAACCAAATGGTTTAGTTATCGCTCAGTAGCTGACTTCAGCTTGGAAGTAGTATCACCTGCTCTGGACTCGCGGGATCAGCTTTGTTAAAGATGCAGGTGCGCTTTGGACGGCGCTCCGGGCAGGCGAAGGAAAGCCAAG
Seq A exon
GAATGGATTGCTTTGAAAAAGAAGAGATTCCCTATCCACCCCTCCTACCTAGCAAGGTGGATCTCCAGCAGATCACCATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAGCAAAGAAGAAAATGCATGTGAAATCCCAAGAGTTGGTAAAACACTGGACTAACACATATGCA
Seq C2 exon
GGAATGAAAGAACAGAAACTTAAAGCCAAGCAAAAGCGTGATGAAGAGATTGAGGCTGAAAGAAAAGTTCTTGATCTGGAGGAAGAAATATACAAAGAAGGAGAAAGAAAGAAGGCCATTGAGAGTGCTAGGCAGTGCCAGTTTCACCAGACGGAGCGAGTGAAGCGCTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-1/9=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=0.171 C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138681=Trichoplein=PU(2.7=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGCGTGGTTGCTAAA
R:
CTGCCTAGCACTCTCAATGGC
Band lengths:
295-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types