DreINT0045191 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14540569-14541127:-
Coord C1 exon
chr8:14540925-14541127
Coord A exon
chr8:14540757-14540924
Coord C2 exon
chr8:14540569-14540756
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TTGTTTTCCCCATATCACAGCAG
3' ss Score
5.88
Exon sequences
Seq C1 exon
CAGACTGTGCCTCCATAGCAACAGAGTACTCTGTGAAGTTTGACGATTCGATGACCGAGGATGACATCGAAGAAAGATCGTTCCGCTCTCTTTTACCATCTGAGGCTCACCGTCGCGAATCACTGGACAAGAAGCCTGAAGCTCATCTCGAATCTGATGAAGACCACAACCATGACCAATCCAGCCCTAGAGCCAGTACAAAG
Seq A exon
GTAGCATCTCTGATTCCAGCTTTGTTCTGTATGAAACAGACTGTTGTGTTTGCTTCTGTTTGGTTGTCATAGTTGGTTTGTTTGTGTTTTGCTGGAGGGTTGATAAGAAGCTCTTTTGTGTGGAATTGATAAGTGACTCAGCTATTGTTTGTTTTCCCCATATCACAG
Seq C2 exon
CAGGATGGCAGCATGCCCTTCTCCAGCGGCCAGGACAGCTTCTCCAAGTTCACCATGGACTTGGTGCGCCAGTACATGAAGGAGGAGGAGGTTCGTGCTCAGCATCAGAGTTCTCTGCTGCGTCTGCGTGAAAAAGCCCTCAGAGAGAAGACCAAGGCTGAAGTGGCCTGGCTGGAGCACCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCATCTGAGGCTCACCGT
R:
TCTCTGAGGGCTTTTTCACGC
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]