BtaINT0036787 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62713105-62714110:+
Coord C1 exon
chr16:62713105-62713301
Coord A exon
chr16:62713302-62713925
Coord C2 exon
chr16:62713926-62714110
Length
624 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ACTTAAACTCTCTAACTCAGGAG
3' ss Score
4.95
Exon sequences
Seq C1 exon
ATTCAACTTCTGTTGCAACAGAATATTCCCTGAAATTTGATGAATCCATGACAGAAGATGAAATAGAAGAAAAATCATTTCGATCTTTACTACCTTCTGAGAGTCATCGCAGATTTAACATGGAAAAGAAAAGAGGCCATCATGATGACTCTGATGAAGAAACTTCTCCAGAAAAGACTACCCTGTCCTCTGCCAAG
Seq A exon
GTGTGTTTTAGTTTACCCATGGAGATACTTCATATATAGTTATGGATATGCTCTCTCAAAAGTGTGAAGTATCATTTTGTATTTGAACTCAGTTGTCAGCTACCAGAATATTTTTCCTAAGGTACCAATTTTGGGGGTTTTTTTTTGGGGGGGGGAGTATAGAATTTAGCTTTTCTTTCCTTATAAAGTCGCTTAACAAATATATTCCTCGAAATAATACATAGGACCTTTGAGGATGTGAGCCAGAGTTATGTCTTGAGCTTTTTCATTCACTTCAGTCTTACAACACTTTATTCCATTAAAAAAAATTGCATTTATATAATCCTTCTTATTAAATTTTAAGCCTTTTGGATAACAGGGACAAATTCTTACCATCTTTACATCCCTGGGACAGTGCCTGACTTACTCTAGTTATTTGTTAAAATTTTATTGGGTAAATAAATTGGCAGTTGAGTGTTACTTTCTCTCTCATGTGCCTTTTTTTTGAAGAATGTTCTTTAACATGGTTGGCAGCCTTTCTATATACATAATTTATTTTTATAAGTGCATACCTCTTTTAATGAAGTTAATTAAGTTCCAAAAGGTATATACAGTGATCAAGATGACTTAAACTCTCTAACTCAG
Seq C2 exon
GAGCTGAGCATGCCATTCTCAGGAGGACAAGACAGCTTTTCTAAATTTACTATGGAGATGGTTCGACAATATATGAAAGAAGAGGAAATGAGAGCAGCTCACCAGTCTTCACTCCTGCGTCTCCGTGAAAAGGCCTTGAAGGAGAAAACTAAAGCTGAACTAGCCTGGTTAGAGCATCAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAATTTGATGAATCCATGACA
R:
TTCTGATGCTCTAACCAGGCT
Band lengths:
352-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development