HsaINT0033799 @ hg19
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:180022105-180023069:+
Coord C1 exon
chr1:180022105-180022301
Coord A exon
chr1:180022302-180022884
Coord C2 exon
chr1:180022885-180023069
Length
583 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
AAAGAAACCATCTACTTTAGGAA
3' ss Score
3.23
Exon sequences
Seq C1 exon
ACTCAACGTCTATTGCAACAGAATATTCTCTGAAATTTGATGAATCCATGACAGAAGATGAAATAGAAGAACAATCATTTCGATCATTACTACCTTCAGAGAGTCACCGCAGATTTAACATGGAAAAGAGAAGAGGTCATCATGATGACTCTGATGAAGAAGCTTCTCCAGAAAAAACTACACTGTCTACTGCCAAG
Seq A exon
GTGTGTTTCACTTTATCTGTGGAGGTAAATGGTTGTGGATATGTTCTCTCAAAGATATGAGAAAACATTTTGTACTTATCTCATTTGTCAGCTACTAGAATGATTTTTCTAAGATATCAGTTTTATTTTATAGTTTTCCTATGAAATCTGGTTTCACTTTCCTTACAAAGTACAATACAAACTTATTTTTTGGAATGATATATAAGGCCTTTGAGGATCTGAGCCAATATTATCTCTCTAGCTTTTGTACTTGCTTCACTCTTCTAATACTTTATTCCATTTAGAAATTTACATTCGTTCTTACCAAATTGTAATCCTCTTGGTTAAGAGGAACAAATTCTTACCCACTTTGTATCCTTGGGACAGTAATTGGCTTGCAGTAGTTTATTAAAATTTTATTGGCTGAATAAATTAGCAGATGAATGTTAATCTGCCTCATGTGCCTTTTTAAAGAATATACTCTTACATTGTTGGTGGCCTTGTTAAATACATAGTTTGTTTTTGTAAATGCATACCTCTTTTAGTGGAATTAAGTACCAAAAGGTTAGATGATGATAAACAAGAAAGAAACCATCTACTTTAG
Seq C2 exon
GAACTGAACATGCCATTCTCAGGAGGACAAGATAGCTTTTCTAAATTTACTATGGAGATGGTTCGACAGTATATGAAAGAGGAAGAAATGAGGGCAGCTCACCAGTCTTCACTCCTGCGTCTCCGTGAAAAGGCCTTGAAGGAGAAGACTAAGGCTGAATTGGCCTGGTTAGAGCATCAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-CEP350:NM_014810:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.768
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAACGTCTATTGCAACAGA
R:
TCTCCTTCAAGGCCTTTTCACG
Band lengths:
342-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)