GgaINT0038293 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6330781-6331672:-
Coord C1 exon
chr8:6331476-6331672
Coord A exon
chr8:6330966-6331475
Coord C2 exon
chr8:6330781-6330965
Length
510 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAATTTGTCTTGCCATTCAGGAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
ATTCTGCTTCTGTTGCAACTGAGTATTCCCTGAAATTTGATGAGTCCATGACAGAGGATGAGATTGAAGAGAAGTCCTTTCGGTCTTTGCTACCCTCTGAAAGTCATCGTAGAATTAACTTGGAGAAGAAGCGCGGTACTCGTGATGATTCTGATGAGGAAGTCTCCCCAGAAAAAACCGCTCTGTCATCTATCAAG
Seq A exon
GTATGTCAAGTGACCATAGTTAAGGTAGATAAACTGTTACTGTTCAATTATGCTGATGAATTTGTTGGGCTTTTCTGTGCTGCTTGTGCTTACAAACTTTGGTTCTTTGAGCATTTGAAAACATAAGAGCATAAGAGTTGTATGAACATCCTTTATGTCACTGTTGTGCAAGTAAGATGGTTTGTTTTGTGGAACAGTCCTTACAGGCCTGTGGCTTTGGAGAAGAATGATGTTTTGAGGTAGATGATAAAAAACCAGTGAATGAATTCTTCCTAGTACTCCTACTCACATCTAAGAGGTACAAGCAGATGCTGCTTCTTACTCTCGTGAGAAGACATCCCAAAACTGTCATGCAGCCCAGGGCAGAAAAAAGTGGTCTTATAGTAGCTCAGAGAGAAAAAACAAATTCCCTTCTTATGCTGAACCATGTGCATACACACAGTTTGTACTTGAAAAAGGCTTTGAAATTTCTTTATTAACAAACCATGCCAAATTTGTCTTGCCATTCAG
Seq C2 exon
GAGCTAAGCATGCCTTTCTCAGGAGGGCAAGATAGTTTCTCTAAATTTACTATGGAGATGGTAAGACAGTACATGAAGGAGGAGGAAATGCGAGCAGCTCATCAGTCCTCACTACTTCGGCTCCGGGAGAAGGCTCTGAAGGAGAAGACAAAGGCTGAGTTAGCTTGGTTGGAACACCAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTTCTGTTGCAACTGAGT
R:
TTCTCCTTCAGAGCCTTCTCCC
Band lengths:
342-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]