MmuINT0034836 @ mm9
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157748570-157749913:-
Coord C1 exon
chr1:157749717-157749913
Coord A exon
chr1:157748755-157749716
Coord C2 exon
chr1:157748570-157748754
Length
962 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
AAATAAATTGTGTGCTTTAGGAG
3' ss Score
6.2
Exon sequences
Seq C1 exon
ACTCAACTTCTATTGCAACAGAATACTCCCTGAAATTTGATGAATCTATGACAGAAGATGAAATAGAAGAAAAGTCATTTCGCTCTCTACTACCTTCTGAGAGTCATCGTAGATTTAACATGGAAAAGAAAAGAGGCCATCATGACGACTCGGATGAGGATGCTTCCCCAGACAAGACTGCTCTGTCTTCTACCAAG
Seq A exon
GTGCGCTTTTACTAAGGAGGCTCATGATTGCAGTCATAGGTTTTCAAAAGTATGAGAACACATTTATATAAATACCAGGTATATAATTGGCAACTATCAGAGATATTGTCCAAGATCAGATTTATATTATACATGTAAAATCTGGCTTGGTTGCTCAAATAAAATAGAATATAAACTTTTTAGTTATAATAAGACCTTTAAAGATCTCAACCAGTATTACAGCTTTTTCATTTCATCCATTTGAAATATATATTCTTCTTTCCAAAGTGTATGCTTAATGGGAAAGAGGGACAGAGTTTTACCCTGCTTGGTTCCCAGTCCACTGCATGACTTGCAGTAACTGTTTATTTAAAAAAAGGTTCAATTTTTTTTTTTAGGTGAATGTCACTTCCTTCCTCTCCTCTTTTTGAGCAATATTTTCTTATATGGTAGATGGTTTATACAATGCTCATTTGTTTCATTTCTTTTTTATTCATTTCTTTTTAAGATGAAATCTCACTGTGTTCCTCAGGCTGGTCTCAAACGTGTTCATGCGATCCTCATAGCTTAGCCTCTGGAACTATAGTCATGTGACTCCACCGTATATCCTCATAGCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCATATATCCTCATAGCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCGTATATCCTCATATCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCGTATATCCTCATATCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCGTATATCCTCATATCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCGTATATCCTCATATCTTAGCCTCTGGAACTATAGTCATGTGACCCCACCGTATCTTTTGTAATTTGCTTTTTATAAATATGTAACTTTCTAAATGAAGTTAAGTGCTAAAAGTTTTGAAATAAATTGTGTGCTTTAG
Seq C2 exon
GAGCTGAGCATGCCATTCTCAGGAGGACAGGATAGCTTTTCTAAGTTCACCATGGAGATGGTGCGGCAGTACATGAAGGAAGAGGAAGTGCGCGCAGCTCACCAGTCCTCACTTCTGCGTCTTCGAGAAAAGGCCTTAAAGGAGAAGACAAAGGCCGAACTAGCCTGGCTAGAGCATCAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-Cep350:NM_001039184:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGAATACTCCCTGAAA
R:
GGCTAGTTCGGCCTTTGTCTT
Band lengths:
349-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: