DreINT0045193 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14538266-14539308:-
Coord C1 exon
chr8:14539221-14539308
Coord A exon
chr8:14538413-14539220
Coord C2 exon
chr8:14538266-14538412
Length
808 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGCCGTTATTTCTCCTACAGGCG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GCGTCTTCGGGATAAAGGAGAGGATGATAAAATGCCCCCACTTCGTAAGAAACAGAGAGGCCTGATAATGAAACTGCAGCAGGAACAG
Seq A exon
GTAAAATTATATCTGAAATTGAGATTATCTCTAAGCAAGGGGTTCCCAAACAATTCAGCCTGTGATCCCCAAAATAACAAACTCGCGACTCCCAATATCCTCTGAGGTGGTTATAAATATAAAGTTTGTTTTTCAATTTTGGAAAACACCATTTGGAGATCATCCTCCATGCTCAGCTGTGGCCTGTATTTATTTTTAATGTACGCGAGTGCCCTAAAGGTGTCAAAAAGTTTTACATAGTGCCATAAAATCAATCTGCTATATCTATTACTTTCTTTAATATAATGTAATCACCACAGGAGTCGCAAAAAAATCGAAAGGCTCAAATTAAAAATCATGTTTTTTTATTTCAAGGTTGTTTTTTAATGTAACTTTTACCTATGCTATGCATAAAATATGGTATTTCTAATAGTTTAATAAAATACATTAGAATTTTGGAAATCACCAAGCGACCACCCCCCAGCTACACTGCTTTAAGATACACTCAGAAATAAATGATATTACAATTTTCACAACGTCTTAAATTACACACAATGCCTATAGAAAATCATCATACCCTGTGATCCCTATTCTCATTATACCCTGCTTTCAAAAGACCTTCAGGATAAAGTTGTAGAAAGGCAGAAATTAGGAGAAGGCTACAAAAACATTTCAAAGGCTGGAAAAGTTATTTGTAATATGATTCGATTTTAGGCTGAATGGCAAATAAAGTAATTATTTTAAAAGGGTATGATGATTTTCTGTAGGCACTGTAAATTATGTCATACAGGGGGAAAAAATTAAAACATTGCCGTTATTTCTCCTACAG
Seq C2 exon
GCGGAGATTAAACGACTCCAGGAGGCCAATAAAGCAGCGAGAAGAGAGAGACAGCTGCTCCTCAAACAGCAGGAGGAGATTGAGAGAATGAGACACACAACCCTCAAACTCAAAGAGCGACTCAAGACTGCTGGAGACACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTTCGGGATAAAGGAGA
R:
TTGTGTCTCCAGCAGTCTTGA
Band lengths:
230-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]