MmuINT0034838 @ mm9
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157744565-157748003:-
Coord C1 exon
chr1:157747916-157748003
Coord A exon
chr1:157744712-157747915
Coord C2 exon
chr1:157744565-157744711
Length
3204 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CCTAATTCTTTAAATGTTAGGCA
3' ss Score
3.42
Exon sequences
Seq C1 exon
GCATCTACGAGACAAAGGAGAGGATGATAAGATGCCCCCACTCCGGAAGAAACAGCGTGGTTTGCTTTTAAGACTTCAGCAAGAAAAG
Seq A exon
GTGTGTTGGGAACAGCACCTGTGTGACGGTTTGTCCCAAGGGAAGCTTGTGAATGGAGCTTTACCTAATCACAGTTTGCTGTTATCACTGCTTCTAAGATCCAGCTGATCCAGCTGCTTATTCCTGTAGGACAAGGATTATGAGGCATTTCTTGCTAGTCTCACCTATTTCTCTTATTTTAAAACTGTCATATTGCTTACTAGACAGTCAAATGTACCTTCATGTACTACAGAGAATAAAAAACTACAAAATACAAATTACAAAATTAAGCTATGTGTAGAAGAGTAGATGTGGGTTAATACTTCGCACTGTTTCCTTGCGTAGTAGTTTATGGCGTGCATTACATATCGACCAGATTCATGGCTTAGTGAACTTAGAAGGACCTTAACTTTGTGTTCTGGAGAGACAGCATAGTACATGATGATTAGGAACTCGGGTTCTGGGGTCTGATTGCCTGGAATAAGGTGATATGAGCGATGTCATAGATTATTACTTAAATAGTGTCAAAAAATCGGTTTACCCAGGAATGTCATCACTGACTGTATTATTTATTATAGGAAATGCATTAACTTTCTGTTGACATAATGAACACCCAAGGTGAAGAACAGGGTTTATTTTGGTTATATTTGAGAGGTTTCAGTACGTGGTTGGTTGGTTCAGTTGCTTTTGGACCTGTAAGTTAGGTAGGTAGTGTATCATGACAGGATCACAAAATCTTGAAGGATGGGAAGCTCTTGGTAGCTAGGAAGTAAAGAGAGAGAAAAGAAGAGACTAGTCATAACCCCAATTTAAGTTCCTCTCAAGAGTCTACCCCTGCTTAATCACTCACTGACCTTCTAATACGTGGATCTTAGGAGACACTTATCCAATGATAGCAGAAGATTCACATCCTCTTCCCTCTTTGGATTCCCTGGAAAAGTCATTGAGTTATATGTTATTTGCTTCAGAAATTCAAGCACAAACCAGTGCCCTAGCACAAATTGGGGACATCAGATTGAACTGATAAGTCATATTCTTTACTTTTATGCACATACAGTTAAAAAAGTATATGTTGATTAACAAAGCCCTAATTAAGTAGTAAAAATGATAATCTCATGATTGTGACCCTTACATTTGTGTGTCATCTGTGTTTAACAAAAATGTAAAGCTCACACTTAGGCCCTGCTTTGGCTAGCTGACTACAGTGATTAATGCATGGAAAAGTATTTGTGCAGTAATTTGAATTGGAATTCAAAAAAGCCAAGTGTTTTTGTCTTTTTAAATTTGTGTGTTCCATTAAATTCTTAAAATGAACATACCAAATATCTTAGGGTTTTATCGCTGTGAATAGTCACCATGTCCACAGCAACTCTTATAATGGCAAACATTTAATTGGGGCTGGCTTACGGTTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGCATGGCAGTGTGCAGGCAGACATGGTGCTGGAGGAGGAGCGGAGAGTTCTGAAGGCAGCCAGGAAGGCACCTCTCCCTGCAGTGATTGGAGCTCAAGCACTAGAAGCCCTTGTAGCTGACTCCTACACTGACACACTTCCTCCAACAGTACCACATCTATTCTAACAAGGACATACCTCCTAACAGCGTCACTCCCTGTGGGCCAACCATTCAGACACACTCGTCTATGGGGCCAAACTTATTCAAAGCACTATAGAGTCAGACTTTGATAATTGTTGAGTCTGTCTTATTTTATTTTACATAATAATTTCAGTTCTGCCCATTTTCCTTCAAATGCCTTAATCTCATTATTTATAGTTGATAAATGTACATGGTATAAATGTACCACATTTTTTAAATTCATTCTTATGTGGGGAGACTTCTGGACTGGTTCCATATTGTGGTTATTATTATGTGTGCAACAGTAAACACAGCTGTGCAGAAATCTCTGCATTCTGATGACTTATAGTCCTATTTAGATGCTGGATTGTATTTCTGTCTGGATATGGTGAGATGGTATAACTGGGTCATTTAGTATTCTATTTTTAGGTTTTAAAAGAGACTCCATACTGATTTCCATAGTGGTCACACCAGTTCACATTCCTACCCGTAGCATTTAATGGTTTCTCCTTCTCTATGTCCTTATTAGCATTTCTTGTCCTGTTTTCTTAATGATAGTTGTCTTTCAGTTTGCATTTCCTTATTGTAGACTGACAACACAGCCCCACTCCAAAATGCCACTTTTACTTGAAAGAATTATCAACAAGCAAACTATGCTTATTCCTGTCTTCAGCAGTTAAGAGCATTGCTACTCTTGAAGAGGACTTGGGTCATTTGAATAGTGAAAATGTATTTTATGCCACATTAGAATGAATCCAGACCATTAAACTGTTAACTTTTCAGATAGCTAATAATAAAAACAAAAAACAAAAAACAAAACCAACCCAACAACTCTCAGACATGACTAATGAAAATAGCTGGTTTTTAGTGTCTTTATTAGCTTTTCTCATTAGTAAATTGAGTGGGCAGAGAGATGGCTTAGAGGTTAAGAGAACTGGCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCTTAGGGTGGCTCATAACCATCTGTAATGAGATTTGGTGTCCTCTTCTGGCATGCAGGCATACATGCAGGGAGAATGTTGTATACATAATAAATAAATAAATAAATAAATAAATAAATAAATCTTAAAAACAAAAAACAAAACCCTGCATTATGGGCCATAGACTGTTATCATTGATTTGCTTTTCCTACTGTTAGGAACTTCTTAAAATAGTTCATGACATAAAACAGTTATAGAGTTAAAGCATTCTTTAGATAGCGAGAAATGTTAGGATTTAAGAATTTAACAGTACAATAGTGGTTACACTAATTGGCTTGCTGATGTGCAGCTATTAAACAGGTAAATGTAAACATACAGTAACATTATAGGAAAATGTGAAAGATATGAAAGGTTAACAAGGACTATGAATTTGCCAGCATGTTTGACTATAGTTATTAAAGCTAAGAGATCATACTAAACTGTTTTAGAATGATGGAGTTATTTATAACATTTTCCCTCCACTAATTCAAAATGTTTTGAATTCAAAATGCTATCTTGAATTACATTGTATCTGTATTCTGTTGATGACTTCATTCTTTTTTTTATGCTACTTTGAATTTATCTCCTTCAAATCTCAGTCCCTTTTCCTAATTCTTTAAATGTTAG
Seq C2 exon
GCAGAAATCAAACGTCTTCAAGAAGCCAATAAGGCAGCCCGGAAAGAGAGGCAGCTGATCCTTAAGCAGCAGGAGGAGATCGAGAGGATCCGCCAGACCACCATAAAACTGCAGGAGAAGCTCAAGTCTGCAGGGGAGAAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-Cep350:NM_001039184:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: