GgaINT0038295 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6329713-6330312:-
Coord C1 exon
chr8:6330225-6330312
Coord A exon
chr8:6329860-6330224
Coord C2 exon
chr8:6329713-6329859
Length
365 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TAATCTTTTATACCTAAAAGGCA
3' ss Score
2.95
Exon sequences
Seq C1 exon
GCATTTGCGAGACAAGGGAGAGGATGATAAGATGCCCCCTATTCGAAAGAGGCAGCGTGGTCTTCTGCTGAGACTACAGCAGGAAAAG
Seq A exon
GTAACTGATGCTTTCTAGGAAAATCCTATAGAATCTTCTGTGATGCTTTGGCCACTGTAGAAGTTAAGAACTGATAGCTCTGTGCCAGGCTTTTGGATAGAAAAGCAGCATTATTTCTCACCATATAAAAATTCACCTTTTGATGGTATTTAACATGCTGTTTTAAAGGGTTCTTCTATATCAGTAATCTCATGAGTTGAGACCTGAGTGTATTAATTGTCTGTTCTCTGCTGCTGAAATTGCAGGCTAATTACTTCATCACAGTTTTGGTAACTCTGATCTCATATTGTGGACACTGAAAGTTTCAGAATGTGTTGGAGAGCTGTCTGTCAAACTTACTTTGCTTAATCTTTTATACCTAAAAG
Seq C2 exon
GCAGAAATTAAGCGTCTGCAAGAGGCTAACAAGGCTGCTCGGAAGGAGAGACAGCTAATCCTTAAACAGCAGGCAGAAATAGAACGAATCCGTCAGACTACAATGAAACTGCAGGAAAAACTGAAATCTGCAGGAGAAAACAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCGAGACAAGGGAGA
R:
TGTTTTCTCCTGCAGATTTCAGT
Band lengths:
230-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]