DreINT0051639 @ danRer10
Intron Retention
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20702467-20706643:+
Coord C1 exon
chr16:20702467-20702598
Coord A exon
chr16:20702599-20706544
Coord C2 exon
chr16:20706545-20706643
Length
3946 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACATCCCTTTTGCTCCACAGGTG
3' ss Score
11.3
Exon sequences
Seq C1 exon
ATGCTGGGAGGCTATGCAGATTTTCTCTATCAGACGGGTCTGGTGGATGAACTGCAGAGGCAGCATGTGAAGATGCAGACAGATGCAGGAGTCAAACTGATTCAGGAGCAGCGATGGGTGGAGGCCTTCCAG
Seq A exon
GTGAGCCTGTTTTTTCAGCAGATATTGAATCTGTTCCACTAGATACTTGTTATTAGGATGCATTTTTATCACCCCTATCACTTACAACATTTTGAACCAATTTTATATGTGGAAGTCATAGAAACTTCACTTTAGCACAGATGTCTTTACAATATGCTGGCAAACAAAAGCAGTTCAGTCTTTTCTCCAGAATAACTTTATTTATATGAAGCTAGTAATATTATATATTTTAAATGAGGATAAAAGCTGTTTGACATTTAAGTTTGACATTTAAACTCTTACTCATTTCTGTACTTCTCCTCCCTGGCATTTAAAAAGGCCAAATTTAATTTTGACCCTGAAAGAGCACAAAAAAAATGCAGTACGCCCAGAAAATGTAGAAGTTTTCCTCTTCATAGACCTGTTTAATAGAGATTGGTGATTCGAGAAATAAAAACAGTTTCAAAACAGTAGAGTATAATTAAATTTGCCTCGCAAAAAATTATTCACCATTTCAAAGTGTAAAAACATGACATGCTAGGTACACCTGCTGATCAACTGTGTAAATGCAACAAAAACGCAGTAAAACATTTATTAAAATGGGTCTTATCAGACACTGCAAACTGTAACATATCAGAAATGTCCTTAGCTCATTTAATATTATTAAATATTGAAGGGATAGTTCACACAAAAATTTTAATTTACTTAATTTTAGTCATTTACTCGTCCTCTGGTGGTTCCAAACTTTCATGTGTTTTTCTTTTGTTGAACACAAAACTATATATTTTTAAGAACGCTGAAAACCTAAAACCACTGACTTCCATAGGAAAAACAAATACTCTGAAGGTCAGTGGTTACAGGTTTCCAGCATCCTTCCGAATATCATCTTTTGTGTTTAACAGAAGAAAGTAACTTGATGGGGTTTGAAACAAGTAAAGGGTAAATAAATAATGAATTTATATAAATGAATTTTCATTTTTGGGTGAACTTTTCCTTAAAGTTTCTGCACTCTTTTCTAAAAGTTATGAAGGCTTATAATTTTGTTCCATTGTGGGCTCTGTTGACAGAGTGCTTAAAAGTGTTCTTGGATTTTCAAAGGATTACAGTTGATCCACTGAATTCACAATAGAATGTTTTGGTTGTTTTTGGTTTCTTTTCTGGACTTTAAACATTTCGGGCTCTATCATACACCTGGTGCATTAAGGCGCAAGCCATTTTTACGTGATTTGTTACTATTTTTAGACCAATGCAAATGATATTTGCAAGTTTTTTACCACGTTGTTTAAATAGCAAATCCATTTGCGCCACTTTGTGGTCTTATTGGGTGTTCTGGTCTATAAAGGAGGTGTGTTGTTGGCACATTGCTATTTTGAGGAATTGAAATAGACCACACCATTGACCAACTAAAAGCTGGTCTAAAGTCCAGCACAGGGTGTGTTAGTTTTGCACCTATGCAGGTTAAATGCTTAATACACAGGATATACAGCAATGCACAAATATCTTTACATATGAAAAAATAAAGGAATAAAATGTTACAAAAATGATTATTTACTACAGAAATATGAAAAAAACACTACCTCCATGCCTTCAACTCGGGGGGCTTTTTTTTTAGTTTATTCATGGCAATTTGCAATTTTATTTTAAAGTTATTATCAGTAGTAGTATTATTTATTATATGCATGATTATTTTTGTTTTAATAAAAACAAGTTTAGATTTGTCCATCTGTCATATTGTGGGGATGTCTGCATCACCATATGGGGCATACTGTAAGAACAGAACGTGTTTGGATATAACTAAGTTTTTTAACCTCACTTCACTATTACTATTCATTTATTTGTTTGCTGGATGTTACAACTGAATTTAGAAATAGTTTTAAAACAAATTTTTGCGCTTAAACAAAATTTAATATGTAGGCTAATGGATGTCTTCAGTGGAGTGCGTCCAACACCGTTTGCTTATGCACAAAAGTGAAGCAGTAAAGTAAAGTGACCGAATGGAGGAGGCTCATTCTTTATCCTTACGCAGATGGTTTGTTTTACTGATTTCTCGCTAGTGAAGTATTCAGTTTTTCCACTTACAAAGTCCGCCATGTAAATAGCAAATGCACCATAGTGTGATGCAATTGACTCTTAAAGCAAATGTGAGATGAAACTCTGATTGGTTTAATGCACGTTTGGCTCAACACCCCTATAACTCATTAAGAGAATAAGCTCAACCCTGTTAGACCATGCGCTGCAGCGCAAACCGTATTTTTCCGCCCTTAAAATAGCAACATTAGATTCAGACATGCCCTTAATGGTTTTGTGTAATGCGCTTTAGGGCCTTATCATACACCCTGTGCAAGGCACGACGCAGCTGTTGTTTGCTAGTTTTAGCTCGGCGCAAGAGTTATTTTGACTTTTTGCATCATGCTGTTTAAATAGTAAATGCATTTGCGCTCTTATGTGCGCCCATAGGTGTTCTGGTCTAAAAAAGGAGGCATTTATAGGTGCATTGCTGGCATGTTGCTATTTTGAGGAACTTAAATAGGCAAAATAGACCAGAATAAAGCGTGAAGACCAGAAGGGATCTTCACGCGCGCGCTCAACTGATCGAGCGCGAGAAAACAATTCCCGCGCCCGCACATCATCATCTGTGCGCACGATGGACGCTCTCGCGAGCGAGGTCATGCCTACAGCGCGCGCGCGCGATTAGTTCTCTCCGCTCGCTCGCTGGTTCTTCTCTCTGCTCACGCGAAACATTTTGGATTTTTGTCAGTCCTAGGGCGAGACTTAGATTACTTGTTATCTCTAACGCTATTGGCTACTGTAATTTTTGAGCTGTAGTTTTTGAGCTGTAGTTTTCTCACGTGTAGTGTCTGCTCACGGTTAACTTCTCCTCGTGCGCACCGCTGTGCTCGATTAATATTGGCATTGATTTGCCGCCATAAATATCTTTACAAATGAATAAGGATTAAAATATTACAAAAATTATTATTTTTTAGCCTACTTAAAAACCACTACCTCCATGCCTTCTGAATTTTGGGGGGCTTTTTTAGTTTATTTATGACAGTTTGCTTTTGTATAATGTTATTATTTGTAGTAGTGTTGTTTATTATATGCATAATTATATTTGTTTTATTTAAAAAAAACTTACCACCTGCACACCTGTCAGGTTGTAGACCAAATGGGGCATAGCATGTGTATTTGGATATAACTTTTTTTGGAACTGAATTTAGAAATAGTTTTGAAACAAATCTTTGCGCTAAACAAAAAAATATATTGTATAGGCTCATGGATGTCTGTGCGTACAACACGTTTCCTTATCCACGATAGTGAAAGTGAAAGTAAATAATGAGGAGCTTCATCTTTCATTCTTGTGCTGTAGATGCTCAGTTTAACTGTTTACTTGCTAGTGAAGCATTCAAGTTTTTTTTTACTTACAAAGTCTGCCATGTAAATAGCAAATGAACAATGGCGGGACGCAACTGACTCTTAAAGGAAATGGGAGAGAAGTATACCTATACCTATAACTCATTAAGAGAATAAGCTCAACCTTGTTAGACCATGCGCCGCAGCGCAAAGCTGATTTTTCCATCCTTAAAATAGCAAAAGTGGATTCTGACACGCCCTAAATGCTTTTACACCCTGCGCTTTGGACTTTGCGCATGAATCGTCAAAATAGAGCCCTTAGACTGCACATAGATTGTTAAAATAAAACCCATGAGGTGAGGGTGATTAGTTAATAACATAATATTTGTTTTAGAGTTATCTAACCTTCCAGTTTCATCTGAGAAATGATCATTCATTTTAGCTGAACACTTCTGAATGGGTTACTAAAAGGGAAGCAGAGCTGAGACAAAAACTCTATGTTCTGTCTTCATGTTTTAGTTGAGATTACGTCAAACTTTGACTAAAAAAATTCACATTTCAAAGCACTTCACAGGACATTTAAATGAACTCTGAAAACATCCCTTTTGCTCCACAG
Seq C2 exon
GTGTTTGACAGCTTACTGAATGGGGATCTTGTTCCTTATCCTTCATACTTCCAGAACGTCACTGGTTGCACCAACTACTTCAACTACATGCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480:ENSDART00000078984:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.6=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]