RnoINT0041709 @ rn6
Intron Retention
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84082669-84087486:-
Coord C1 exon
chr4:84087355-84087486
Coord A exon
chr4:84082768-84087354
Coord C2 exon
chr4:84082669-84082767
Length
4587 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTTCTCCTTCTCTGACCTAGGTC
3' ss Score
11.06
Exon sequences
Seq C1 exon
ATTATAGGAGGGTACGCGACATTCCTGTATGAAGTTGGCTTGTTGGATGAACAGCAGCGAAGGCACTTCCGGAAGCAGTGTCGAAAGTGCATAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAA
Seq A exon
GTGAGTGCTGGGACCCCAGGATTCCCTTGAGCAACTAGAACCATCTGAGGAGAGGAGGGGTCAGGAGGCACACCCTGGTGCTCCAGCTTTTGGGATGGCATCTATCCTCTCCTCTGTCTGTGATCAGGAGGTAGAATGAGTGAACACGCAGAAAAGCACAACCTGCATTTCTCTGAGTTCACTTCTGCTGTACTTTTAACCCCAGATCTTTCTGGCACGCTTATCTGACTGTGGCTCTCATTAGTCGTCCTGATTTCTTTAAACACTGTGTGGGGCCCGAAGGCATTCTGTAGCATACATATGGAAATTAGGAGCAAGGTAACCTGGGAAGTGGATGCCTGAGCTTCTTCAGCAGATGCTTGGACACATTTAGAAGGGTTATGTCCACAAGCGGTAGTTCAACCGTAGAGACGACCTGGTGTGTAACCTAAGGCATAGGCCTCCAAGAGTCAGGATCAAAGTCTACAACATGTAGTGTAATGGGAGACAGCTTCTAAGAGACGCAGTGTGGGGGAATATTATTACACAGTTAACCTAACACCTGAGCATGAGAGTGATGATGTGATTTGAGACTTTACCTACTTGTTTTTCTTTGGATTTTGGTTATTTACGGTGTAACGTATGTTTTAGCCAGTGCAAAGGCAAAGCAAACGATCTTCCCTCAGAACTTTTGCTATGCATCTATTGAACCATCCTGTCTGACGCCCGGGTAAATAGAGCAAGGGATGGGGACCTCAATCTGCTTGCTCTTAGACATGCACTTCATGTGCCTAATGTGCCTAAAGCCATTGTGACTGTTTACAGCAAGGCCTGATCTTAATGGACCTTCAGGGACATCAGACATGCCAATTGTGATCGAAACAAGAGACATATAGACTTGGGGAGAAAAGAAGCAATTTAAAGTGATGCTCATTTTACAAGCAGGGTACCAGGATGCTACTGAGATCCCTTGAGGAGGTGACGTGGTTTGCATTGAAGTCTGATAGCAGCAAGCTGTGCAGATGGATTGAGAAAGAAAGGAAGGTCCCAGCCCTAGACAGGATGCACAGACTCTCCTTTCTGGGTCAGGGCACCAGATGCGGCTGCAAAATGTGGAGTCCGGATGCCTTGTGCAGCTGTAAACACGAAGGAAGCGGGATTGTCTCGGGAGCATGTAAGATCCAGCTTTCACTGGCAATAATAGTATCTTCTAGAAAAGTTGTAGGCTTTAGGCTACCTGCTGTGGGAAAAGAGGGGGAAAAGAGGGAAGCTTGAGAATTGACAACTTTCATGTTGTGCGAGATTAGTTTGCAAGAGAGAAACGTTCACTATGGTTTTGAAGAAGCACACAGAGATTTTCAAGCAGTGTCTGAAGCAAGACCAGCTGAGAGGCTTGAAGAAGGAAGGAAGCAAAACGGTGTCTGAGGCATGCGCTATGACAGCCACAGCACTCAGAGACTGGGAAAACTATTGAAAAGTATGGCGCTTTCTATGGTTAGAGTCCGTGAGACTATGGCACGGGAGTCTATCCCAAACCAAGTTCAGTAGAAAATTAAAATTAAAACACTTCCCGTACCAGTCCTTGAAGGTATGGGATGTCTCTCCAATCACTGGTCCAAGATCTTGAGTGACGGATTGAAGCCTCTGAGTTGTCAAAGGAAATGGACAAAGCAGCGCCTAGTAGGTTAACTAAAGATGCTAAGACATCCTGAAATTCAAGAGGACATAGATGTCAAAATCTCAAGTCCAACAGCCTGTTTGATGTTCTCACCCTTTTGTTTTAAAATTGTATTTGTTTTATCTTAAGTGTATGAGTGTCTGCCTGCATGTGCATGGTGTGCACCACTTGCATTCCTAGTGCCCTAGAGGCCAGAGCAAGCCATCAGATCTCCCACAATTCTCCAAGGGTAAACGGCTGATCTCTTCCAATCACACTCTGACTCACAGAGCATTCTCTGTGAAACGAGCTTTGATTATGAAGTAGATTTCAAAATAATTTAGTCCTACTATGTGTTACACAGCAAGTCGTTTTGTTTCTTGGTGAAAACAACTGTTGGTTTGTTTTTTTTTTTAATTAAAATTGAGAGTATGTATGTGTGTGAGGTCTGTGCACATGTGTGCCTGTGCACACACGCTATCACAGATGTGTGTTTAAGCATGCATATGGGAGGCCAGAGTTTGAAGTCAGACCTCCCCCCCAGATGTTCCCTCCACTTCTCTTTGTGAGACAGGATCTCTCATATTGCCTGGGGCTTTCCTAGATAATGGTACAGAAGCTGATCAGAAAACCCAACGATTTACCTAGTCCCATCTCCAAATCTCTGACATTACTGGTAAGTAGCACGACCCCAGGGGTTTTACACAGGTACTGAGGATTGAATGTGGGCCCTTACACTTGCGTGCCAAATACCAACCCACCACCCTCACCCCAGCCAATTGACTCACCAGTGATGTGTGCATTCAGTACAACTTCTAGCATCGAGTGGGCAAATTAATGAAAGACGCCTGCTCAGGGTGATGAACCTATACGCTTATTAAATAAGCAGGTATCTCTGTGGTTGAAGATGGAGTGTGGACATTTCTCTAGATGCAGCCGAGAGTAGATTCCCAGCATGCCTAGCAGACTTTGGATGGTTCCTTAACCTTCTCGATCCTCATCCAGACCCCACATCTCTAGACAGGGACCCTGCACAAGCAGCGGTACTGAGGAGAGGATGCACTGCCGTTGGCAGGCAGTACAGCAGCAGGCGTGTGGTTGAGAGCACAGGCTGAGGGCATGGAGGAGGTAGAGCTCTTATCAGTGTGGGTACCCTGGCCAAGTTACTGCACTTCTGAGAATCTTAGTGTCCTCACAGAACATGAGGATGATGGTGTTTTATCTTCTAATAAACTAAACTCATTCTTGATCGATGGTTTCTAAGAATGTGTGAAATTCATGTTGTACAATCCTTTCAGAGGGCCCACTTAAAATATATCAGCAGCAGCAGCAGGAGCAGAAAGAAAACACTACTGCTCCCCACTCTCAACTTCCTCCTTTCTCCATCTTCTAGCCTTAACTCAGGCCCGCTTCCAGGGCACCTTCTTCTTCACCCCAAAGTCTTGAGCTTTGCATTTCATAGCCTCAGAGAGCATCACCAAGCACTGTTTAGGGCAGTTGTCTACAGTGGGTCTCCACATTCTCCATCACCCCCATCAAAACTCCTGGTGACCGTGGGGATGGTCCTCTGTCCTTTAGCTCTGTTTTTCCCCCTGCAATCTTGTTCTCCCCTTGAGTTGCTTATTTCGGTTATAAAAACAAAACTAAACTAAGAACAAACAAACAAAAGCAACCAAATAAATAAACAAGCAAACAAAGTATTTCCAGAACCATCCATCACCCACAATCTGGAGCTGGAACACCTTTCTTCAGTTTCTATGCCCGATCCCTCCAGCCCACTGTGCAGCTCACTGAGCCACCATCTCCTCATGAGCCCTAAGCCCCGTGACTTCATTTCTCCGATTATCCAACCTAAACCCAGGCTCACACAGTCAAGCCGCAAAGCTCCACAAATACTCCCTTCAACATCTTTGGCTAAGCTGCAGCCATGGCTGGTGCTGCTTCTTTGCTACCTTCATGGTGGCCCTTGTACAGCAGCCTGTAGCTGGAGAAAAACAAATGGCCTTGGTGACCACTCCTCCCTTCTGGTAACTGAACCTGGAGTCATGGATGCCCTCCAATGGCTCCAAGACCTTGAACTCAACCAGCTCCTTGAATCTCAGCACACAACCCTCGCCCTCTCTGCTCATACTGCGGGTGTGACCAGGGGCCATGTGAAAGCAACCCCTCTCACCAGACAATCCCCCAAGTTGATGCATCTAGTTTTATTATCTTCTGGCTGCAATATTCTTTCCCTGGTCGTCTATATTCTTAACTTTCTTCCAGCCAATGGGTCATAATTTGAATGCCATTCTTAAGTGAAACTTCTTTTCTCAGTGTACCCTACACGTAGGCCTGAACACCCATAACACCTCCCTCTCCTGTTTTCCTTACTGTTCCCTAATGCAATACCGCTCTAACACTCGACATAATCTGCTTCACCATGCTTAATTGTTTCTCTAGAATATACGTTCTAGGAGGGATGGCATTTGCCTGCTATGAATGTTTAGAAAGTAGAATGAAAAAGATTTTAAAATAGAAGGGCGGGAGAAGTAGCTTGATTGGTGGAGTGTTTGTCACACAATCCTAAAGACCTGAATTGGAGCCTCACTACGCAAGTAAAAGCAAGAGCTTGGGCGTGGTGGTGTGGACTTGTGCCAAGGAGCACAATCTACCATACTTGGCGAGTCCTGGGTGGACGAGAAAACCTGTCTCAAATAAAGCAATGGACAGTGGTTGAGGAATGATAGATTGTCTTTGGCCTCCATATGTGTGCACATGTGCATACATGTTCACACACATGCATATGTATATCATGCATGTGAATGAATGTATGCACACATAAGAACACACATATAGACACAGATATCCTAAAAAAAGAAGGAAAAATGTCTTGACTGTATGATACAATGGTGGCCGTGTAAGTGACCACTCCCTGACACTGTCCTCCTCTTTCTCCTTCTCTGACCTAG
Seq C2 exon
GTCCTGGATGAACTGCTGGATGGAGATTTAACAGCTGGTCCATCTTTCTTCCAGAATGTGACAGGATGCACCAATTACTACAACATTTTACAGTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172:ENSRNOT00000012196:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.6=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]