MmuINT0041917 @ mm10
Intron Retention
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53926810-53932534:-
Coord C1 exon
chr6:53932412-53932534
Coord A exon
chr6:53926909-53932411
Coord C2 exon
chr6:53926810-53926908
Length
5503 bp
Sequences
Splice sites
5' ss Seq
TCGGTTGGT
5' ss Score
3.58
3' ss Seq
TTTCTTCCTCTCTGACCTAGATC
3' ss Score
9.97
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTTCCGGCCCTAGCACACTATATCCACTCCCTCAACCCCGTGCGGAAGTTCAAGATTCGCCTAAAAGGAATTGCCATTGGAGATGCATACACTGATCCTGAATCG
Seq A exon
GTTGGTGTCCTGCTTTTTCTTTCTTAATCTGTCCCTCCCTTACAGAGATCAATTCCCTTGAATTGAACGAACATCCCTCCTACCCCAGAGGCCAAATTTGTTAAAATGTAAGGTTGATGTCACTCAAATTCAATTCTTAGTTTAACCTTTCAGTGTGTCAACTTACTGTCTCAGCCTGTGTGGTGGCCAACGTCAGATTGCGTGTTTGTGTGACTTGTGTGTACAGTTGTCTGGATTGGCTAATCCCAGCAAAAAATTAGTAGGTAATAATGTTTCCAGCAAAAAAAATTTAGTAGGTCAATTGTTTCTTCTTGAAGCCAAGGGCGCCCAACCTTCTCTCTGTGGCGCTCACGTGTATCACTTCTGTCACCAGATTATAGGAGGGTATGCGGCATTCCTATATGAAATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAAGTGAGTGCTGGGGGCCCCCAGGATGCCCTTGAGCAATTAAAACCATCTGAGGAGAGGAGGGGTCAGGAGGCGCACCATGGTGCTCCAGCCTTTGGGATGGTATCTATCCCCTCCTCTGTCTATGATCAGGAGGCGAAAGAGTGAACATGCAGAGAAGCTCCACCTGCACGCCTCTGAGTTCACTTAGGCTGTATTTTTAACCCGAGATCATTCTGGCATGCGTATCTAACTGTGGCTCTCATTAGACGTTCCGATTTCTTTAAATGCTGTGTGGGGCCTGAAGGCATTCTGCAGCATATGGAAATTAGAAGCAAGGTAACCTGGGAAGTGAATGCCTGAGCTTCAACAGATGCTCGGACACATTTAGAAGGGTTATGTCCACAAGCAATATTTCAGCTATAGAGGTGATCTGGCGTGTAACCAAAGTCATATGCCTCCAGGTGTCAGGATCAAAGTCTAAAAAATATAGTGTACTGTAGGGGGGCACCTTCTAAGAGGCACAGTGTGCAGTTAACCTAGCACTTGAACATGAGAGTGATGATATGATTTGAGCCTTTACCTACGTTTTTCCTGTGGAGTTTGGTTATTTATGGTCTAGCGTTTCACTAAATACTGAGATACAGGAACTTGTGTGTTTTGGCCAATGCAAAAGCAAAGCAAACAATCTTCCTTCAGTACTTTTGCTATGCATCTATAGAACCATCTTATCTGACACACAGGTAAATGATGTGAGGTATGAACTCTGAAGACCTCAATCTGCGTGCTCTTTCATGTGCTTTATGTGCCTACGGCCATTGTGTCTTTTTGGACCAAGGCCGGATGTGAATAGTCTTTCAGAAGCATCAGATATGCCAATTAGGATCAAACAGGAGACATATAGACTTGGGAGAAAACAAGCAATTTAAAGTGAAGCTCATTTTACAAGCAGGGTACCAGGACACTGCTGAGATCCCTGGGGGAGGTGACTTGGTTTGCATTGAAGTCTGATAGCAGCAAGCTGTGCAGATGGGTTGAGAAAGGGAAGTCCCAGCCCTAGACAGGATGCACAAACTCTCCATTCTGGGTCAGGGCACCAGATGTGGCTGCAAAATGTGGAGTTAGTATGCTTTGTGCAGCTGTAAACACGAAGGAAGAGGAATTGTCTCGGGAGCATGTAAGATCAAGCTTTCCCTGGCAATAAGAGTCTCTTCTGGATACGTTTTAGGCTTTAGGGTACCTGCTGGGGTAGAGATGGGGAAAGAGGGATGCTTGAGAATTGAGGCATTTTATGTGGTGTGAGACTAATTTGCAAGAGAGGAACATTCACTATGGTTTTGAAGAAACACACAGAGATTGTTAAGTAGTGTCTGAAGCAAGACCAGCAGAGAGGCCTGAAGAAGGAAGGAAGCAAAATGATATGCAGAGCACATGATATGACAGCCATGGCACTCGCAGGTTGGGAGAACTGTTGAAAAATAGGAGTATTTTGTATGGCTAGAGACAGTGAGACTATGGCACAGGAGTTTCTCCCAAACTAAATTCAATAGAAAATCAAAACTAAAACACCTCCCCTAATATTCCTTAAAGGTATGGGCTGTCTCTCCAACCATTGGCTCAAGATCTTGAGTGATAGATTAAAGCCTCTGAGTTTTCAAAGGAAATTGACAAAGCAGTGCTTGGTAGGCTAGCTAAAAATGCTAAGACATCCTGAAAGATGGACCATTCAAGAGGACACAGATGTCAAAATCTCAAGCCCAACAGACTCAGCCTGTTTGATGTTCTCATTCTTTTCTTTAAAAATTTTATTTTATCTTATGTGTATGAGTGTCTGCCTGCATGGACAGACGTGCACCTCATGCATTCCTAGTGCCCCTAGAGGCCAGAATGAGGCATCAGATCTCCTGGAACTGGATTTACACTTGGTTGTTAGCTACCATATATGTGCTGTCAACAGACCCTGGCTCCTCTGCAAGAACGGCAAGTGATCTTAACGGCTGAGCAGCTCCCAGGACCCAGGGTTCTGATTTTTAAGATGAGTCAGTTAGTAAAAGAGTAGAAACGTCTGTTGGGAACACAGGAAACAGGCAAAGCTATCCATATGCATGCACTGATGGGGTTGCTGGTCCCAGAGGAGGGTCATGAGCTATAGAAGGTCACATGGAGGTTGTGGGATGGGTCCTCCTGACCACATGCCCAGGGTTTTTCCCTCATGCAATAGTTCTTGGGTATTCTATAACAATCCAGAGGCATTCCCATAATTCTCCAAGAGTAAATGGTTGATCTCTTGTTCCTTCTATTTTCTTCCTAACAATGCTCTATCTAAATCACAGAACATTCTCTGTGAAACAAGTTTTGATTATGAAGTAGATTTCAAAAGTCTGGAATAATCTAGCCCCATTATTTGTTAGACAGCAAATGTTTTATTTCTCACTGAAAACAATCTATTGGTTTTGTAAATTAAAAATGTGTGTGTGATATATGCCCACATGTTCTTGTGTGCACACACTATAGAGATGTGTGTTCAAGTATGTTTATGTGGAGGCCAGAGGTTGATGTTGCTTTGTGAGGCAGGGTTTCTCACTTGCCTGGGACTCTCCTAGAGAAATTCTCTAGGAGAGAATTCTAGAGAAGCTAATCAGAAAGCCCAGCGATCTAGCTCTTCCCATCTCCAAAGCTCTGAGAGGACTGGTGAACAACACGACCCCAGGGGTCCTCATGCTTGTGTGGCAAGTGCTGTACCAACTGACCTACCCTCCTCACCCCAGCAAATTGACTCCACCAGTGATGTGTGCATGCTGTACAACTTCTAGCAAAGAGTGGACAAATTAAAGAAAGACACCTGCTTGGGGTGATGAACCCACAGGTTTATTAAACAAGCAGGTATCTCCACAGTGTAAAGATGAAATGGGGACATTTCTCCAGATGCAGCCCAGAGCAGAATTCCCAGCATGCCTAACAGACTTTGTATAGTTCCTTACCCTTCTCAGTCCTCACGCCTTTACCCAAGGATGCTGCACAAGCAGAGGTACTGAGCACAGGGAGGCACTGCAGTCTGACTGTTAGTTTAGCAAGCAGGTACATGGTGGAGAGTACAGGCTGAGGCCACGGAGGAGCTAGAGCCATTAGCAGTGCATACCCTGGCCAAGTTAGTGCACTTCCAAGAATCTTAGTTTCCTCACCAAACATTGGGATGATGGTATTTTATCTTCTAATAAACTAAACTCATTCTTGATGGATTTATTTGTTTTTGTTTTTTGATTTTTGTTTTTTTTTTAGAATGTGTTGAATTCATGTCATACAATCCTTTCAGAAGGCCCTTTAAAATACATCAACAGGAGCAGAAAGCAAACACCACCCCTCCCCAACTCTCAACCCCCTCCTTTCTTCATCTTCAAGCAGCCTTACCCCAGGCCTGCTTCCGGGTCACTTTCTTCTTCCTTCTAAAGCTCTGAGCTCTGCATTTCATAGCCTCAGAGAGCATTGCCAAGGACTGTTCAGGGCAGTTGTCTACATCTTGGGTCTCTCTTCACATTCTCTATGAGTCCCATCAAAATTCCTGGTGAATGTGTGGATGGTGTCTCAATACTCAGTTCTTCTGTCTTTCAGCCTCTGCTTTTTCCCCCTGCAATCTTGTTCTCCCATGTGTTGCTTATTCCTGCTACAAAATCAAACTAGATTAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACACAACCAAGTGAATAAACCAAACAAAATCTTTCCAGAACCATCACCCACAATCTGAAGCTGGATCACCTTTATTCAGTTGCCATACCCTCTCCCTCTGGCTCACCTGTGTTAATGAACCAACTTCACAATTGTGCAGCTCTGGTACCTTTCAGCCTGTTGAGCCACCATCTCCTCATGAACCCTAAGCCCCATGACTTCATTTCTCTGATTATCCAACCTAAACCCAGGGTCACACATTCAAGCCGCTAAACTCCACAGATAATTCCTTCAACATCTTTGGCTAAGCTACAGTCGTGGCTGATGCTGCATCTTTGCTGCCTTCATGTTGGTAGCATACAGCTGGAGAAAACCAAACAGCCATGGTGACCACTCCTCCCTGCTGATAACTGAACCCATAGATACCATCCATCAGTTCCAAGACCTTGAACTCCACCAGCTCCTTGACTCTCAGCCCACAACCCATGCCCTCTTTGCTCACACTGTGGGTGAGTGTGACCAGGGGCCATGTGAAAGCAGCCTTTCTCACCAGGCAAACCCCCAAGTTGAAGCATCTGGCTTTATTATCTTCTGCCTGCGGTATTCTCTGATTGTCTATATTCTTGACTTTCTTCCAGCCAATGGGTCATAATTTGAATGTCATCTTCTAAGTGACACTTCTGTTTTCAGGGTCCCTTACACACAGGCACACACACCCATAACACCTCCTATTCCTGTTCTCCTTGCCGTTCCCTGATGCACACACCACTCTTAACACCTAACATAATCTGCTTCACCGTGCTTATTTGTGTCCCTAGAATATACATTCTATGAGGGATGGCATTTGCCTGCTACAAATGAAAGTAAAATGAGAACGATTTTAAAATATAAGGGCTGGAGAGGTAGCTTGGTTGGTGGAGTGTTTGCCATGCAATCCCAAAGGCCTCAATTGTAGCTCATAACCCAAGTAAAAGCAAGGGCTTGGGCACAGTGGCATGGACTTGTGCTGAGGAGTCCAGTCTGCCCTACGTAGCGAGTACTGGGTGGGTGAGAGAACATGTCTCATATAAAGCAATGGAGGTGCTTAAGGGGCGATAGATTGTCATTGGCCTCTATATGTGGGCACATGCACCTATATGCACACAATGCATTTGTCTATCATGCATGTGAATGCATATGTGCACACACAGGAACACACATATAGATGCATACATCATTTAAAAAGAATGAAAAATGTCCTGACTGTAATGATATAACGACAGTTGTGCATGTCACCACTCCCTGTCACTGTCCTTTTCTTTCTTCCTCTCTGACCTAG
Seq C2 exon
ATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTTCATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACTACAACATTTTACAGTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955:ENSMUST00000203101:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(13.7=100)
A:
NA
C2:
PF0045017=Peptidase_S10=PD(9.5=57.6),PF0045017=Peptidase_S10=PU(16.4=87.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types