MmuINT0041917 @ mm9
Intron Retention
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53881901-53882528:-
Coord C1 exon
chr6:53882406-53882528
Coord A exon
chr6:53882033-53882405
Coord C2 exon
chr6:53881901-53882032
Length
373 bp
Sequences
Splice sites
5' ss Seq
TCGGTTGGT
5' ss Score
3.58
3' ss Seq
TGTATCACTTCTGTCACCAGATT
3' ss Score
7.84
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTTCCGGCCCTAGCACACTATATCCACTCCCTCAACCCCGTGCGGAAGTTCAAGATTCGCCTAAAAGGAATTGCCATTGGAGATGCATACACTGATCCTGAATCG
Seq A exon
GTTGGTGTCCTGCTTTTTCTTTCTTAATCTGTCCCTCCCTTACAGAGATCAATTCCCTTGAATTGAACGAACATCCCTCCTACCCCAGAGGCCAAATTTGTTAAAATGTAAGGTTGATGTCACTCAAATTCAATTCTTAGTTTAACCTTTCAGTGTGTCAACTTACTGTCTCAGCCTGTGTGGTGGCCAACGTCAGATTGCGTGTTTGTGTGACTTGTGTGTACAGTTGTCTGGATTGGCTAATCCCAGCAAAAAATTAGTAGGTAATAATGTTTCCAGCAAAAAAAATTTAGTAGGTCAATTGTTTCTTCTTGAAGCCAAGGGCGCCCAACCTTCTCTCTGTGGCGCTCACGTGTATCACTTCTGTCACCAG
Seq C2 exon
ATTATAGGAGGGTATGCGGCATTCCTATATGAAATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955-Cpvl:NM_027749:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(19.9=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGTTCCGGCCCTAGCACA
R:
TCAAAGGCCTTCATCCACTCC
Band lengths:
240-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: