RnoINT0041708 @ rn6
Intron Retention
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84087355-84087942:-
Coord C1 exon
chr4:84087820-84087942
Coord A exon
chr4:84087487-84087819
Coord C2 exon
chr4:84087355-84087486
Length
333 bp
Sequences
Splice sites
5' ss Seq
ACGGTTGGC
5' ss Score
2.85
3' ss Seq
CGTATCCCTTCTGTCACCAGATT
3' ss Score
9.02
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTTCCGGCCATAGCATACTATATCCACTCCCTCAACCCCGTGCGAAGGTTCAAGATCCGCCTGAAAGGAATTGCCCTTGGAGATGCATACACTGATCCTGAAACG
Seq A exon
GTTGGCGTCCTGTCTTTTCTCTCTTAATCCGTCCCTTACAGAGACTAATTCCTTTGAATTGAGTGAACACCCCTCTTGCCCTAGAGGCCTAACTGATTAAAAAAATAAGGTTCACTTCACTCAAATCTAATTCTTAGCTAAACCTTTCAGTGGGTCAACTTACAACCAATTCGAGATTGTGCGTATATGTGACTTTTCTGTTACATATGTCTGTGATTCTAATTGCCTGACTTGACTAATCCCAGCAAAAATTAATACGTCAAATGTTTCTTCTCGAAGCAATGGGTGCCCAACCTTCTCTCCGTGGCACTCACGTATCCCTTCTGTCACCAG
Seq C2 exon
ATTATAGGAGGGTACGCGACATTCCTGTATGAAGTTGGCTTGTTGGATGAACAGCAGCGAAGGCACTTCCGGAAGCAGTGTCGAAAGTGCATAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172:ENSRNOT00000012196:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(13.7=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCCGGCCATAGCATACT
R:
TCAAAGGCCTTCATCCACTCC
Band lengths:
238-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]