BtaINT0043600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007146 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr4:67549603-67550421:+
Coord C1 exon
chr4:67549603-67549725
Coord A exon
chr4:67549726-67550289
Coord C2 exon
chr4:67550290-67550421
Length
564 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
TTTGCCTCTTTTCTCCTCAGATC
3' ss Score
12.61
Exon sequences
Seq C1 exon
TCTTACGCTGGGAAGTACGTGCCAGCCATCGCCCACTACATCCACATACTCAACCCTGTGACGACCATGAAGATCAACCTGAAGGGAATTGCTCTCGGAGACGCGTATTTTGATCCCAAGTCG
Seq A exon
GTAGGTGGCTCTTCTTTCCTTTCCATTTTGTTCCTTAAGGAGATGCAATCCCCTTTAATCAGACAGAGGCTCCTCTTAACCCTAGAGACCTAACTTCATAAAGGGAAATACTGTTCCTCAAATGCTTTCTAATGATTTCAATCTTCTAATTTTTACCAAATGTTCTATGGTGTCAACTTACTGTGTCAGCGTAGGTTGGCTGAGTGCAAGTGTCAGTGTGTGAGTGCCTGTGCTTGGTGTGTTTGTGTGTATTTTGTGTATGTATGTGATATATGGGTGTGTATGTGTGTTGTGTGGTTATGTGGTATATATGTGTATGTGTGTTTGTGTGGTGTATTTGCATATGTTGTGTGGTAGGTGATGCCTGTGACGTATGTTTGTGTGTTTGTAAGTTTTATGTCTGTGTGGGTGTGGTGTATTGTGTATGCATTATGTGTGTTGTGTGTGTGTGTTGTCCCACTCCACTAATTAACAAGTTACAGAGGGTTATTTCTCAAGCAGACGGGCTCCCCTCACATCCCTTTCTCTCCCTGTCGTGTCTGTGTTTGCCTCTTTTCTCCTCAG
Seq C2 exon
ATCATAGAGGGCTACCCATCATTCCTGTTCCAAATTGGCTTGTTGGATGAGCAGGAGAAAAAGTACTTCCAGAAGCAGTGCAATGACTGCGTGAAATTCATCCGCCAGGAGAAGTGGCTTCAAGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007146:ENSBTAT00000009404:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(9.9=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACGCTGGGAAGTACGTGC
R:
GCTTGAAGCCACTTCTCCTGG
Band lengths:
247-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]