HsaINT0041070 @ hg19
Intron Retention
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29111389-29112039:-
Coord C1 exon
chr7:29111917-29112039
Coord A exon
chr7:29111521-29111916
Coord C2 exon
chr7:29111389-29111520
Length
396 bp
Sequences
Splice sites
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
3' ss Seq
TGTGTCTTTTTTGTCCTCAGATT
3' ss Score
12.66
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTGCCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTGCTATTGGAGATGGATATTCTGATCCCGAATCA
Seq A exon
GTAGGTTTCTCCTTCTGACTTTCTATTTTGTCTCTTAGGGGGATTAAATGCCTTTTTATCAGATGGAAGGCTCCTCTTAGAGGTCTAACTTTTGATAAGGGAAACACCAGTTGACTTTATGACTTAAATCTCCTAATTTTTACCAAATGTTTCAACGTATCAATTTACTGTGTCAGCTTACATTGGCTGTCAGTGCAAATGTGTGTGTGTTTGTATTGTGTTGTGTTCTGTTGTGTGTGTTGTGGGGTGTATATGTGTGTGTGCATGTAATTATCCTACTTGGCTAACCAGCACAATATTAACAATTACAAAGGATTATTTCACCAAGCAAATGGGCTTCCTTAAGGTCTCTTTCTCTCCCTTTGTCACATTGATGTGTGTCTTTTTTGTCCTCAG
Seq C2 exon
ATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGGCTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAGCAGAACTGGTTTGAGGCCTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-CPVL:NM_019029:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(16.7=100)
A:
NA
C2:
PF0045017=Peptidase_S10=PU(13.5=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATGCAGGGAAATATGTGCCA
R:
TCAAAGGCCTCAAACCAGTTCT
Band lengths:
254-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)